Cow genome map

Conread name: rret01_b8.y1

Conread position: 1-180
Cow position: chr24:31816557-31816736 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 159

Conread position: 1-191
Cow position: chr24:5360698-5360883 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 38

Conread position: 1-195
Cow position: chr24:15288806-15289003 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 1-195
Cow position: chr24:28496603-28496408 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 135
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 8, 182

Conread position: 1-196
Cow position: chr24:35675518-35675708 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 7, 87

Conread position: 1-199
Cow position: chr24:6886990-6887187 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 8, 29

Conread position: 1-199
Cow position: chr24:18357073-18356877 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 8, 162

Conread position: 1-200
Cow position: chr24:30314047-30313848 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 82

Conread position: 1-201
Cow position: chr24:18474750-18474546 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 1-204
Cow position: chr24:2402389-2402193 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 100

Conread position: 1-205
Cow position: chr24:1269765-1269963 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 38

Conread position: 1-206
Cow position: chr24:27608119-27607925 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 58

Conread position: 1-206
Cow position: chr24:29539950-29539743 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 10, 40

Conread position: 1-211
Cow position: chr24:10499193-10499410 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 10, 45

Conread position: 1-211
Cow position: chr24:30235852-30236063 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 8, 38

Conread position: 1-212
Cow position: chr24:5141921-5142131 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 8, 162

Conread position: 1-216
Cow position: chr24:3412662-3412875 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 10, 98

Conread position: 1-226
Cow position: chr24:37823506-37823731 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 12, 98

Conread position: 1-257
Cow position: chr24:27726033-27725777 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 179
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 10, 199

Conread position: 3-214
Cow position: chr24:18302695-18302911 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 7, 37

Conread position: 6-214
Cow position: chr24:2379937-2380151 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 145
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 9-197
Cow position: chr24:33372543-33372724 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 9-218
Cow position: chr24:14550783-14550987 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 104, 18

Conread position: 10-203
Cow position: chr24:42687837-42688026 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 182, 28

Conread position: 10-210
Cow position: chr24:28510786-28510982 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 102, 55

Conread position: 10-213
Cow position: chr24:21834970-21834768 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 191, 88

Conread position: 10-214
Cow position: chr24:37651714-37651917 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 155, 104

Conread position: 10-471
Cow position: chr24:17311228-17310764 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 28

Conread position: 11-203
Cow position: chr24:230273-230465 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 87, 123

Conread position: 12-178
Cow position: chr24:20874673-20874839 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 97, 45

Conread position: 12-180
Cow position: chr24:41916250-41916418 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 117
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 12-195
Cow position: chr24:20364419-20364240 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 86, 0

Conread position: 12-211
Cow position: chr24:29984993-29984797 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 136
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 184, 106

Conread position: 12-213
Cow position: chr24:27940630-27940436 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 77, 34

Conread position: 12-232
Cow position: chr24:22133162-22133381 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 165, 102

Conread position: 13-191
Cow position: chr24:10219393-10219214 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 93, 0

Conread position: 13-195
Cow position: chr24:29606041-29605857 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 109, 0

Conread position: 13-199
Cow position: chr24:27713413-27713230 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 129
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 101, 0

Conread position: 13-206
Cow position: chr24:27844536-27844345 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 183, 85

Conread position: 13-214
Cow position: chr24:39523457-39523255 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 137
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 99, 0

Conread position: 14-198
Cow position: chr24:37974988-37974804 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 151, 100

Conread position: 15-289
Cow position: chr24:3165812-3166085 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 162
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 83, 161

Conread position: 21-186
Cow position: chr24:25122344-25122504 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 21-205
Cow position: chr24:28062947-28063135 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 18, 52

Conread position: 21-206
Cow position: chr24:7757772-7757955 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 95, 0

Conread position: 22-213
Cow position: chr24:11887161-11887346 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 90, 16

Conread position: 38-189
Cow position: chr24:24540474-24540322 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 35

Conread position: 38-195
Cow position: chr24:2992864-2992704 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 74, 47

Conread position: 38-206
Cow position: chr24:42146227-42146391 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 74, 42

Conread position: 38-214
Cow position: chr24:36286586-36286766 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 78, 0

Conread position: 39-201
Cow position: chr24:28256041-28255880 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 153, 67

Conread position: 39-214
Cow position: chr24:7275721-7275893 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 168, 33

Conread position: 39-229
Cow position: chr24:22129620-22129435 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 69, 110

Conread position: 40-206
Cow position: chr24:21656425-21656598 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 147-473
Cow position: chr24:38640587-38640919 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 236
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 99, 54

Conread position: 149-473
Cow position: chr24:36712695-36713022 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 10, 57

Conread position: 153-471
Cow position: chr24:19642372-19642691 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 229
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 85, 30

Conread position: 181-473
Cow position: chr24:12466725-12467023 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 62

Conread position: 186-346
Cow position: chr24:33321402-33321233 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 7, 145

Conread position: 187-418
Cow position: chr24:33936397-33936627 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 58, 21

Conread position: 187-467
Cow position: chr24:29154847-29155136 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 56, 14

Conread position: 187-473
Cow position: chr24:14377172-14376873 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 6, 144

Conread position: 187-473
Cow position: chr24:18267999-18267707 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 14

Conread position: 187-473
Cow position: chr24:32362634-32362334 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 21

Conread position: 187-473
Cow position: chr24:36557093-36556794 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 14

Conread position: 190-385
Cow position: chr24:25438779-25438971 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 59, 104

Conread position: 195-471
Cow position: chr24:12239361-12239640 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 14, 131

Conread position: 195-473
Cow position: chr24:14381798-14381504 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 217
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 14, 138

Conread position: 196-473
Cow position: chr24:14195370-14195077 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 13, 137

Conread position: 208-473
Cow position: chr24:6440259-6440537 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 36, 121

Conread position: 208-473
Cow position: chr24:6963355-6963634 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 36, 123

Conread position: 208-473
Cow position: chr24:8606834-8607113 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 123

Conread position: 208-473
Cow position: chr24:13234746-13235024 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 36, 123

Conread position: 208-473
Cow position: chr24:15295332-15295611 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 206
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 38, 123

Conread position: 208-473
Cow position: chr24:17323199-17323478 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 122

Conread position: 208-473
Cow position: chr24:19689074-19688797 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 70

Conread position: 208-473
Cow position: chr24:19884800-19885079 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 37, 123

Conread position: 208-473
Cow position: chr24:20366872-20367147 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 202
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 36, 123

Conread position: 208-473
Cow position: chr24:21248441-21248162 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 36, 123

Conread position: 223-471
Cow position: chr24:38004410-38004163 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 99, 0

Conread position: 240-472
Cow position: chr24:12570460-12570695 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 146, 81

Conread position: 241-473
Cow position: chr24:6021530-6021295 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 171, 56

Conread position: 241-473
Cow position: chr24:16081939-16081702 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 178
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 180, 81

Conread position: 242-473
Cow position: chr24:6069309-6069066 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 37, 131

Conread position: 242-473
Cow position: chr24:7064113-7064350 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 113, 80

Conread position: 242-473
Cow position: chr24:33986023-33986259 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 80

Conread position: 243-473
Cow position: chr24:19468042-19467801 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 184
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 44, 89

Show alignments to all cow chromosomes.