Cow genome map
| Conread name: | rret01_b8.y1 |
| Conread position: | 1-178 |
| Cow position: | chr25:2624797-2624975 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 8, 40 |
| Conread position: | 1-180 |
| Cow position: | chr25:23245001-23244821 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1-184 |
| Cow position: | chr25:26306203-26306016 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 10, 83 |
| Conread position: | 1-185 |
| Cow position: | chr25:35339189-35339002 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-186 |
| Cow position: | chr25:13222901-13223086 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 181 |
| Conread position: | 1-191 |
| Cow position: | chr25:31657276-31657086 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 115 |
| Conread position: | 1-197 |
| Cow position: | chr25:19129856-19130053 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 8, 82 |
| Conread position: | 1-199 |
| Cow position: | chr25:18721119-18720925 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 106 |
| Conread position: | 1-199 |
| Cow position: | chr25:33550510-33550714 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1-200 |
| Cow position: | chr25:18288767-18288567 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 22 |
| Conread position: | 1-214 |
| Cow position: | chr25:13826436-13826648 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 10, 103 |
| Conread position: | 1-215 |
| Cow position: | chr25:36873332-36873115 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 10, 97 |
| Conread position: | 1-258 |
| Cow position: | chr25:11432944-11432689 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 10, 132 |
| Conread position: | 2-195 |
| Cow position: | chr25:36746446-36746250 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 7, 66 |
| Conread position: | 7-199 |
| Cow position: | chr25:24115308-24115114 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 105, 189 |
| Conread position: | 7-200 |
| Cow position: | chr25:35762597-35762791 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 7-201 |
| Cow position: | chr25:41150958-41150761 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 82, 190 |
| Conread position: | 9-211 |
| Cow position: | chr25:11956814-11957016 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 103, 185 |
| Conread position: | 10-208 |
| Cow position: | chr25:21893349-21893544 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 10-211 |
| Cow position: | chr25:40682749-40682950 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 14 |
| Conread position: | 12-186 |
| Cow position: | chr25:19364046-19363871 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 12-195 |
| Cow position: | chr25:22734021-22734204 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 101, 52 |
| Conread position: | 12-199 |
| Cow position: | chr25:20523221-20523037 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 72 |
| Conread position: | 12-200 |
| Cow position: | chr25:22348450-22348256 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 99, 188 |
| Conread position: | 12-200 |
| Cow position: | chr25:26679239-26679429 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 102, 184 |
| Conread position: | 12-203 |
| Cow position: | chr25:15349892-15349703 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 100, 41 |
| Conread position: | 12-204 |
| Cow position: | chr25:1840337-1840528 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 12-206 |
| Cow position: | chr25:11060145-11060342 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 100, 90 |
| Conread position: | 12-215 |
| Cow position: | chr25:24669431-24669237 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 12-217 |
| Cow position: | chr25:20202926-20203129 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 195, 94 |
| Conread position: | 13-202 |
| Cow position: | chr25:7216840-7217022 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 13-204 |
| Cow position: | chr25:13272583-13272775 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 99, 181 |
| Conread position: | 13-204 |
| Cow position: | chr25:30852781-30852972 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-207 |
| Cow position: | chr25:28945034-28945225 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 13-215 |
| Cow position: | chr25:7380825-7380621 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 102, 150 |
| Conread position: | 13-216 |
| Cow position: | chr25:22315219-22315425 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 14-204 |
| Cow position: | chr25:7673316-7673514 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 15-203 |
| Cow position: | chr25:15573404-15573593 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 97, 168 |
| Conread position: | 16-205 |
| Cow position: | chr25:19679372-19679560 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 17-205 |
| Cow position: | chr25:1802629-1802819 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 21-211 |
| Cow position: | chr25:31926355-31926169 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 170, 93 |
| Conread position: | 22-214 |
| Cow position: | chr25:18934612-18934419 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 23-207 |
| Cow position: | chr25:4157222-4157037 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 27-186 |
| Cow position: | chr25:26072533-26072374 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 131, 140 |
| Conread position: | 32-215 |
| Cow position: | chr25:2662429-2662612 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 40-211 |
| Cow position: | chr25:21082366-21082191 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 45-200 |
| Cow position: | chr25:17141148-17141306 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 46-200 |
| Cow position: | chr25:2414844-2414999 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 149 |
| Conread position: | 54-195 |
| Cow position: | chr25:21192885-21192743 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 139-473 |
| Cow position: | chr25:18268813-18268472 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 40, 94 |
| Conread position: | 147-471 |
| Cow position: | chr25:11664815-11665153 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 55 |
| Conread position: | 187-453 |
| Cow position: | chr25:41098998-41098721 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 187-455 |
| Cow position: | chr25:41106627-41106906 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 57, 248 |
| Conread position: | 187-473 |
| Cow position: | chr25:17555284-17554987 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 192-471 |
| Cow position: | chr25:24656245-24655956 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 54, 137 |
| Conread position: | 195-473 |
| Cow position: | chr25:17656837-17657127 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 135 |
| Conread position: | 196-473 |
| Cow position: | chr25:35552880-35553173 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 136 |
| Conread position: | 208-416 |
| Cow position: | chr25:18489228-18489442 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 36, 80 |
| Conread position: | 208-458 |
| Cow position: | chr25:9494386-9494132 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 208-473 |
| Cow position: | chr25:18191184-18190906 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 36, 74 |
| Conread position: | 208-473 |
| Cow position: | chr25:22150280-22150557 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 113 |
| Conread position: | 208-473 |
| Cow position: | chr25:32578455-32578176 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 208-473 |
| Cow position: | chr25:35568678-35568400 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 122 |
| Conread position: | 209-418 |
| Cow position: | chr25:37647638-37647856 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 32, 121 |
| Conread position: | 218-473 |
| Cow position: | chr25:11042834-11043104 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 220-473 |
| Cow position: | chr25:34344486-34344223 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 26, 114 |
| Conread position: | 242-473 |
| Cow position: | chr25:18887222-18886986 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 80 |
| Conread position: | 242-473 |
| Cow position: | chr25:26281269-26281505 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 80 |
| Conread position: | 242-473 |
| Cow position: | chr25:28862116-28862352 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 80 |
| Conread position: | 242-473 |
| Cow position: | chr25:35562261-35562033 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 178, 80 |
| Conread position: | 274-473 |
| Cow position: | chr25:41120278-41120475 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 24, 6 |
| Conread position: | 307-473 |
| Cow position: | chr25:29313992-29313826 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 127, 15 |
| Conread position: | 351-473 |
| Cow position: | chr25:33837734-33837862 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.