Cow genome map
| Conread name: | rret01_b8.y1 |
| Conread position: | 1-188 |
| Cow position: | chr27:6319872-6319685 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 128 |
| Conread position: | 1-191 |
| Cow position: | chr27:12459237-12459048 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 11 |
| Conread position: | 1-196 |
| Cow position: | chr27:19508966-19508767 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-198 |
| Cow position: | chr27:22171250-22171056 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 1-199 |
| Cow position: | chr27:4944561-4944753 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 105 |
| Conread position: | 1-200 |
| Cow position: | chr27:6106653-6106456 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 1-201 |
| Cow position: | chr27:22220507-22220300 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1-206 |
| Cow position: | chr27:19387971-19387767 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 1-206 |
| Cow position: | chr27:20897072-20897276 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 5, 31 |
| Conread position: | 1-207 |
| Cow position: | chr27:7343475-7343683 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 10, 92 |
| Conread position: | 1-207 |
| Cow position: | chr27:31210500-31210294 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 29 |
| Conread position: | 1-208 |
| Cow position: | chr27:24223905-24223698 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 1-209 |
| Cow position: | chr27:19576370-19576580 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 10, 195 |
| Conread position: | 1-211 |
| Cow position: | chr27:17397501-17397710 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 10, 115 |
| Conread position: | 1-213 |
| Cow position: | chr27:13204412-13204203 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 1-214 |
| Cow position: | chr27:16103760-16103550 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 1-214 |
| Cow position: | chr27:23560078-23560293 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-231 |
| Cow position: | chr27:23594274-23594041 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 46 |
| Conread position: | 3-211 |
| Cow position: | chr27:22035426-22035630 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 6, 110 |
| Conread position: | 3-211 |
| Cow position: | chr27:27528870-27529075 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 85, 153 |
| Conread position: | 5-215 |
| Cow position: | chr27:24952007-24952214 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 26, 43 |
| Conread position: | 10-199 |
| Cow position: | chr27:426912-426722 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 111, 30 |
| Conread position: | 12-194 |
| Cow position: | chr27:27055227-27055053 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 12-206 |
| Cow position: | chr27:11134027-11133832 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 12-206 |
| Cow position: | chr27:15454149-15453959 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 100, 19 |
| Conread position: | 12-207 |
| Cow position: | chr27:14670441-14670636 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-211 |
| Cow position: | chr27:2949386-2949576 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 12-213 |
| Cow position: | chr27:15003037-15003240 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 184 |
| Conread position: | 12-214 |
| Cow position: | chr27:1067509-1067311 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 181, 86 |
| Conread position: | 12-214 |
| Cow position: | chr27:4398550-4398749 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 180, 104 |
| Conread position: | 13-198 |
| Cow position: | chr27:7412333-7412148 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 99, 180 |
| Conread position: | 13-215 |
| Cow position: | chr27:16705191-16704991 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 118, 102 |
| Conread position: | 13-256 |
| Cow position: | chr27:26226350-26226591 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 99, 72 |
| Conread position: | 14-199 |
| Cow position: | chr27:24035337-24035523 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 93, 181 |
| Conread position: | 15-198 |
| Cow position: | chr27:23957459-23957271 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 16-180 |
| Cow position: | chr27:26504239-26504075 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 96, 15 |
| Conread position: | 16-195 |
| Cow position: | chr27:29493963-29494142 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 90, 124 |
| Conread position: | 20-217 |
| Cow position: | chr27:27606363-27606561 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 85, 144 |
| Conread position: | 21-199 |
| Cow position: | chr27:3498483-3498309 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 21-202 |
| Cow position: | chr27:24440290-24440468 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 140 |
| Conread position: | 21-215 |
| Cow position: | chr27:15668839-15669039 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 23-191 |
| Cow position: | chr27:9253183-9253352 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 23-211 |
| Cow position: | chr27:10581460-10581275 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 15 |
| Conread position: | 23-418 |
| Cow position: | chr27:20283566-20283181 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 61 |
| Conread position: | 26-214 |
| Cow position: | chr27:15315446-15315260 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 48, 53 |
| Conread position: | 27-201 |
| Cow position: | chr27:26087242-26087070 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 133 |
| Conread position: | 38-194 |
| Cow position: | chr27:178778-178620 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 39-223 |
| Cow position: | chr27:29614956-29614770 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 73, 177 |
| Conread position: | 48-221 |
| Cow position: | chr27:22150789-22150961 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 64, 146 |
| Conread position: | 154-473 |
| Cow position: | chr27:27278083-27278408 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 34, 48 |
| Conread position: | 187-471 |
| Cow position: | chr27:5913333-5913631 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 187-473 |
| Cow position: | chr27:22722762-22723050 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 187-473 |
| Cow position: | chr27:27193951-27193665 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 223 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 190-400 |
| Cow position: | chr27:21496771-21496985 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 11 |
| Conread position: | 190-473 |
| Cow position: | chr27:5991641-5991349 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 197-470 |
| Cow position: | chr27:1031244-1031531 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 209 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 46, 132 |
| Conread position: | 201-472 |
| Cow position: | chr27:26327469-26327752 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 208-400 |
| Cow position: | chr27:10378346-10378546 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 38, 120 |
| Conread position: | 208-418 |
| Cow position: | chr27:11433544-11433754 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 44, 114 |
| Conread position: | 208-472 |
| Cow position: | chr27:15034679-15034401 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 126 |
| Conread position: | 208-473 |
| Cow position: | chr27:1535602-1535876 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 121 |
| Conread position: | 208-473 |
| Cow position: | chr27:3233108-3232839 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 38, 123 |
| Conread position: | 208-473 |
| Cow position: | chr27:12749446-12749725 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 123 |
| Conread position: | 208-473 |
| Cow position: | chr27:16031978-16031705 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 117 |
| Conread position: | 208-473 |
| Cow position: | chr27:26599355-26599621 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 71, 44 |
| Conread position: | 209-473 |
| Cow position: | chr27:31267661-31267926 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 217, 30 |
| Conread position: | 210-473 |
| Cow position: | chr27:29952683-29952954 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 121 |
| Conread position: | 216-473 |
| Cow position: | chr27:15273654-15273381 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 28, 118 |
| Conread position: | 242-471 |
| Cow position: | chr27:13900353-13900587 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 80 |
| Conread position: | 242-473 |
| Cow position: | chr27:166456-166229 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 179, 48 |
| Conread position: | 242-473 |
| Cow position: | chr27:4332268-4332033 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 80 |
| Conread position: | 242-473 |
| Cow position: | chr27:19524256-19524020 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 80 |
| Conread position: | 243-473 |
| Cow position: | chr27:26855520-26855755 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 79 |
| Conread position: | 244-473 |
| Cow position: | chr27:5984568-5984339 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 162, 71 |
| Conread position: | 273-473 |
| Cow position: | chr27:14296713-14296908 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 280-473 |
| Cow position: | chr27:21450936-21451135 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 72, 40 |
Show alignments to all cow chromosomes.