Cow genome map
| Conread name: | rret01_b8.y1 |
| Conread position: | 1-177 |
| Cow position: | chr29:23825209-23825031 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-195 |
| Cow position: | chr29:26540539-26540342 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 8, 195 |
| Conread position: | 1-197 |
| Cow position: | chr29:17109961-17110153 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 1-199 |
| Cow position: | chr29:19762272-19762465 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 7, 38 |
| Conread position: | 1-199 |
| Cow position: | chr29:36530868-36531069 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1-200 |
| Cow position: | chr29:9378638-9378838 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 12, 194 |
| Conread position: | 1-202 |
| Cow position: | chr29:21666088-21666293 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1-202 |
| Cow position: | chr29:25737413-25737215 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 162 |
| Conread position: | 1-211 |
| Cow position: | chr29:7290777-7290985 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 116 |
| Conread position: | 2-182 |
| Cow position: | chr29:32197699-32197880 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 3-214 |
| Cow position: | chr29:1007824-1008039 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 6, 73 |
| Conread position: | 5-203 |
| Cow position: | chr29:40791309-40791504 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 7-212 |
| Cow position: | chr29:25092118-25092320 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 106, 28 |
| Conread position: | 10-200 |
| Cow position: | chr29:9709706-9709896 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 101, 120 |
| Conread position: | 10-204 |
| Cow position: | chr29:732632-732818 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 10-211 |
| Cow position: | chr29:22613441-22613635 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 10-214 |
| Cow position: | chr29:29769340-29769137 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 10-221 |
| Cow position: | chr29:36249048-36249264 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 76 |
| Conread position: | 12-199 |
| Cow position: | chr29:22028939-22028759 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 12-200 |
| Cow position: | chr29:19949323-19949508 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 100, 27 |
| Conread position: | 12-202 |
| Cow position: | chr29:19363724-19363913 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 100, 28 |
| Conread position: | 12-214 |
| Cow position: | chr29:12680169-12680375 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 90, 184 |
| Conread position: | 12-214 |
| Cow position: | chr29:39038256-39038052 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 104, 182 |
| Conread position: | 12-216 |
| Cow position: | chr29:36781291-36781090 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 180, 102 |
| Conread position: | 12-222 |
| Cow position: | chr29:5063158-5063369 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 89, 182 |
| Conread position: | 13-206 |
| Cow position: | chr29:26017488-26017291 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 82, 78 |
| Conread position: | 13-206 |
| Cow position: | chr29:32215723-32215913 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 100, 14 |
| Conread position: | 13-214 |
| Cow position: | chr29:9310614-9310820 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 32, 27 |
| Conread position: | 13-214 |
| Cow position: | chr29:22729582-22729783 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 14 |
| Conread position: | 16-191 |
| Cow position: | chr29:40763677-40763501 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 57 |
| Conread position: | 16-229 |
| Cow position: | chr29:41112864-41112660 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 21-202 |
| Cow position: | chr29:17282090-17282267 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 23-211 |
| Cow position: | chr29:936231-936419 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 173, 92 |
| Conread position: | 38-204 |
| Cow position: | chr29:33143315-33143150 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 74, 149 |
| Conread position: | 38-206 |
| Cow position: | chr29:24660724-24660887 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 38-212 |
| Cow position: | chr29:4070663-4070839 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 150, 77 |
| Conread position: | 39-197 |
| Cow position: | chr29:36357166-36357328 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 42-215 |
| Cow position: | chr29:40112425-40112598 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 166, 150 |
| Conread position: | 43-203 |
| Cow position: | chr29:22776123-22776281 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 149-472 |
| Cow position: | chr29:5960246-5960544 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 152-418 |
| Cow position: | chr29:2415700-2415428 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 92, 49 |
| Conread position: | 187-459 |
| Cow position: | chr29:17407550-17407833 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 187-472 |
| Cow position: | chr29:7428703-7428407 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 6, 145 |
| Conread position: | 187-473 |
| Cow position: | chr29:15995967-15995672 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 187-473 |
| Cow position: | chr29:27260710-27260408 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 187-473 |
| Cow position: | chr29:43325926-43326209 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 14 |
| Conread position: | 192-471 |
| Cow position: | chr29:10821502-10821209 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 138 |
| Conread position: | 195-471 |
| Cow position: | chr29:10845373-10845664 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 49, 137 |
| Conread position: | 195-473 |
| Cow position: | chr29:35299337-35299629 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 136 |
| Conread position: | 208-365 |
| Cow position: | chr29:2746023-2745857 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 33, 122 |
| Conread position: | 208-418 |
| Cow position: | chr29:34732766-34732553 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 44, 118 |
| Conread position: | 208-470 |
| Cow position: | chr29:16689264-16689535 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 208-472 |
| Cow position: | chr29:20253597-20253878 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 208-473 |
| Cow position: | chr29:608198-607923 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 113 |
| Conread position: | 208-473 |
| Cow position: | chr29:1477882-1478161 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 208-473 |
| Cow position: | chr29:4199828-4200101 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 208-473 |
| Cow position: | chr29:8624762-8624487 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 38, 116 |
| Conread position: | 208-473 |
| Cow position: | chr29:14500297-14500575 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 121 |
| Conread position: | 208-473 |
| Cow position: | chr29:15967123-15966844 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 208-473 |
| Cow position: | chr29:31095157-31094877 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 208-473 |
| Cow position: | chr29:32514758-32515034 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 208-473 |
| Cow position: | chr29:32542580-32542845 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 213, 44 |
| Conread position: | 208-473 |
| Cow position: | chr29:32807079-32806822 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 208-473 |
| Cow position: | chr29:35274589-35274314 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 121 |
| Conread position: | 208-473 |
| Cow position: | chr29:42256544-42256269 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 100 |
| Conread position: | 208-473 |
| Cow position: | chr29:43255975-43255697 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 209-473 |
| Cow position: | chr29:13019124-13019394 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 37, 116 |
| Conread position: | 216-473 |
| Cow position: | chr29:1307641-1307900 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 80 |
| Conread position: | 217-473 |
| Cow position: | chr29:10644972-10644702 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 29, 113 |
| Conread position: | 240-473 |
| Cow position: | chr29:5980248-5980018 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 113, 82 |
| Conread position: | 240-473 |
| Cow position: | chr29:45206983-45207220 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 190, 82 |
| Conread position: | 241-472 |
| Cow position: | chr29:4518372-4518605 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 174, 93 |
| Conread position: | 241-473 |
| Cow position: | chr29:28657897-28657661 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 180, 81 |
| Conread position: | 242-473 |
| Cow position: | chr29:13584691-13584925 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 179, 73 |
| Conread position: | 242-473 |
| Cow position: | chr29:19890050-19890282 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 186, 63 |
| Conread position: | 242-473 |
| Cow position: | chr29:26162363-26162127 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 80 |
| Conread position: | 242-473 |
| Cow position: | chr29:45461706-45461942 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 178, 80 |
| Conread position: | 253-473 |
| Cow position: | chr29:9330398-9330626 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 58, 53 |
| Conread position: | 282-472 |
| Cow position: | chr29:29590376-29590182 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 149, 40 |
Show alignments to all cow chromosomes.