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Cow genome map

           
Conread name:
           
rret01_b8.y1
        

               
Conread position:
               
1-195
               

               
Cow position:
               
chrX:19469476-19469286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
10, 98
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chrX:34532550-34532741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
8, 161
               

               
Conread position:
               
1-199
               

               
Cow position:
               
chrX:40685298-40685096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chrX:11326067-11325876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
10, 82
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chrX:20957268-20957470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
10, 189
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chrX:23359081-23358884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
10, 38
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chrX:21986260-21986065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chrX:24749118-24749325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 31
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chrX:34792281-34792087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chrX:37072419-37072622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
10, 193
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chrX:42381082-42380876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
8, 168
               

               
Conread position:
               
1-203
               

               
Cow position:
               
chrX:42479863-42480064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 118
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chrX:4289472-4289674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 126
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chrX:11656111-11656318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chrX:42927794-42927591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 134
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chrX:6544287-6544490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chrX:29467748-29467537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
10, 123
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chrX:5026286-5026497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
10, 98
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chrX:2935987-2936203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chrX:27145634-27145846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
10, 119
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chrX:32208792-32208581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
10, 64
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chrX:16836256-16836046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chrX:27668928-27668713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
7, 149
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chrX:32866905-32867118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
10, 114
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chrX:41858850-41858639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 98
               

               
Conread position:
               
2-211
               

               
Cow position:
               
chrX:47345358-47345573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
9, 203
               

               
Conread position:
               
2-238
               

               
Cow position:
               
chrX:1466193-1466434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
11, 196
               

               
Conread position:
               
3-194
               

               
Cow position:
               
chrX:9201580-9201771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
6, 112
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chrX:22482656-22482452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
104, 9
               

               
Conread position:
               
3-209
               

               
Cow position:
               
chrX:33855187-33854983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 61
               

               
Conread position:
               
7-199
               

               
Cow position:
               
chrX:29230036-29230240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
7-204
               

               
Cow position:
               
chrX:29542180-29541990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
7-206
               

               
Cow position:
               
chrX:19394590-19394794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
98, 191
               

               
Conread position:
               
7-214
               

               
Cow position:
               
chrX:32943039-32942833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
95, 157
               

               
Conread position:
               
10-200
               

               
Cow position:
               
chrX:40826711-40826516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
10-202
               

               
Cow position:
               
chrX:34837024-34836836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
10-214
               

               
Cow position:
               
chrX:4328143-4327933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
102, 75
               

               
Conread position:
               
10-214
               

               
Cow position:
               
chrX:35885687-35885486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
86, 75
               

               
Conread position:
               
10-225
               

               
Cow position:
               
chrX:34411886-34412105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
102, 189
               

               
Conread position:
               
12-186
               

               
Cow position:
               
chrX:31436516-31436689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
94, 106
               

               
Conread position:
               
12-194
               

               
Cow position:
               
chrX:8869360-8869176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
12-194
               

               
Cow position:
               
chrX:31983543-31983350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
12-195
               

               
Cow position:
               
chrX:9252121-9251934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
12-195
               

               
Cow position:
               
chrX:23471824-23471639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
12-195
               

               
Cow position:
               
chrX:34376984-34377168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
12-199
               

               
Cow position:
               
chrX:38642291-38642475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
107, 119
               

               
Conread position:
               
12-203
               

               
Cow position:
               
chrX:13913117-13913311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
71, 84
               

               
Conread position:
               
12-203
               

               
Cow position:
               
chrX:34991406-34991599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
12-204
               

               
Cow position:
               
chrX:14883914-14883719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 74
               

               
Conread position:
               
12-205
               

               
Cow position:
               
chrX:34314066-34314259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
100, 181
               

               
Conread position:
               
12-206
               

               
Cow position:
               
chrX:28940284-28940484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
12-207
               

               
Cow position:
               
chrX:13177434-13177242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
185, 93
               

               
Conread position:
               
12-222
               

               
Cow position:
               
chrX:27431876-27431669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
92, 150
               

               
Conread position:
               
12-223
               

               
Cow position:
               
chrX:16984683-16984890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
13-193
               

               
Cow position:
               
chrX:35681610-35681795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
103, 149
               

               
Conread position:
               
13-194
               

               
Cow position:
               
chrX:46068716-46068536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
13-196
               

               
Cow position:
               
chrX:38549490-38549677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
13-199
               

               
Cow position:
               
chrX:42893969-42894154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
13-203
               

               
Cow position:
               
chrX:20583709-20583898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
99, 149
               

               
Conread position:
               
13-204
               

               
Cow position:
               
chrX:29050293-29050479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
13-204
               

               
Cow position:
               
chrX:43115194-43115387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 14
               

               
Conread position:
               
13-206
               

               
Cow position:
               
chrX:25207812-25207621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 54
               

               
Conread position:
               
13-214
               

               
Cow position:
               
chrX:3806725-3806926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
197, 172
               

               
Conread position:
               
13-214
               

               
Cow position:
               
chrX:35409795-35409999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
79, 65
               

               
Conread position:
               
13-215
               

               
Cow position:
               
chrX:27446729-27446932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
14-199
               

               
Cow position:
               
chrX:42875256-42875441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
98, 179
               

               
Conread position:
               
14-206
               

               
Cow position:
               
chrX:12437226-12437043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
14-207
               

               
Cow position:
               
chrX:20666857-20666661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 107
               

               
Conread position:
               
16-195
               

               
Cow position:
               
chrX:10252151-10251973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
91, 22
               

               
Conread position:
               
19-199
               

               
Cow position:
               
chrX:8326953-8327138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
21-198
               

               
Cow position:
               
chrX:39290410-39290586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
144, 83
               

               
Conread position:
               
21-213
               

               
Cow position:
               
chrX:34504998-34504807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
21-231
               

               
Cow position:
               
chrX:44798997-44798788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
22-203
               

               
Cow position:
               
chrX:12802-12980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
23-214
               

               
Cow position:
               
chrX:11529395-11529587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
8, 93
               

               
Conread position:
               
23-227
               

               
Cow position:
               
chrX:12979781-12979576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
89, 186
               

               
Conread position:
               
25-211
               

               
Cow position:
               
chrX:12972738-12972921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
45, 82
               

               
Conread position:
               
26-206
               

               
Cow position:
               
chrX:45110712-45110891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
27-203
               

               
Cow position:
               
chrX:17525810-17525640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
27-229
               

               
Cow position:
               
chrX:23497634-23497435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
29-202
               

               
Cow position:
               
chrX:39642563-39642391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
166, 43
               

               
Conread position:
               
32-195
               

               
Cow position:
               
chrX:41215384-41215552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
38-195
               

               
Cow position:
               
chrX:14135746-14135904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
38-199
               

               
Cow position:
               
chrX:1088075-1087915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 91
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chrX:38094452-38094292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
38-200
               

               
Cow position:
               
chrX:42086895-42087059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 126
               

               
Conread position:
               
38-206
               

               
Cow position:
               
chrX:40556391-40556224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
52, 93
               

               
Conread position:
               
39-222
               

               
Cow position:
               
chrX:4750263-4750083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
56, 43
               

               
Conread position:
               
40-206
               

               
Cow position:
               
chrX:5487869-5487708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
40-209
               

               
Cow position:
               
chrX:6480526-6480353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 157
               

               
Conread position:
               
53-204
               

               
Cow position:
               
chrX:31279841-31279690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
59, 141
               

               
Conread position:
               
54-200
               

               
Cow position:
               
chrX:37176958-37177100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
141-472
               

               
Cow position:
               
chrX:30090855-30090531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 61
               

               
Conread position:
               
145-473
               

               
Cow position:
               
chrX:30229946-30229607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
101, 31
               

               
Conread position:
               
147-473
               

               
Cow position:
               
chrX:22818243-22818579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 54
               

               
Conread position:
               
149-473
               

               
Cow position:
               
chrX:21591458-21591798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 52
               

               
Conread position:
               
163-473
               

               
Cow position:
               
chrX:29891293-29891611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
83, 38
               

               
Conread position:
               
181-472
               

               
Cow position:
               
chrX:21267862-21267566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
16, 144
               

               
Conread position:
               
187-417
               

               
Cow position:
               
chrX:16022972-16023208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
187-471
               

               
Cow position:
               
chrX:5640669-5640373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
187-471
               

               
Cow position:
               
chrX:28648635-28648357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
187-473
               

               
Cow position:
               
chrX:10301121-10300823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 128
               

               
Conread position:
               
187-473
               

               
Cow position:
               
chrX:22126561-22126269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
187-473
               

               
Cow position:
               
chrX:35887300-35887596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 14
               

               
Conread position:
               
188-473
               

               
Cow position:
               
chrX:5366787-5366493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
191-471
               

               
Cow position:
               
chrX:31727687-31727979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
192-400
               

               
Cow position:
               
chrX:21751448-21751231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
49, 137
               

               
Conread position:
               
192-473
               

               
Cow position:
               
chrX:27978607-27978318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
54, 131
               

               
Conread position:
               
194-473
               

               
Cow position:
               
chrX:45375819-45375534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
50, 138
               

               
Conread position:
               
195-418
               

               
Cow position:
               
chrX:36838933-36839166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 136
               

               
Conread position:
               
195-473
               

               
Cow position:
               
chrX:3419005-3418712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
51, 136
               

               
Conread position:
               
195-473
               

               
Cow position:
               
chrX:9010549-9010838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
50, 133
               

               
Conread position:
               
195-473
               

               
Cow position:
               
chrX:36691232-36690950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
196-473
               

               
Cow position:
               
chrX:21413813-21414099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
196-473
               

               
Cow position:
               
chrX:29909211-29908912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
47, 231
               

               
Conread position:
               
197-472
               

               
Cow position:
               
chrX:24730865-24731154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
47, 134
               

               
Conread position:
               
208-403
               

               
Cow position:
               
chrX:15040317-15040111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 122
               

               
Conread position:
               
208-467
               

               
Cow position:
               
chrX:41595561-41595293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
41, 84
               

               
Conread position:
               
208-470
               

               
Cow position:
               
chrX:23133827-23134100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 98
               

               
Conread position:
               
208-471
               

               
Cow position:
               
chrX:4766936-4767200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
35, 122
               

               
Conread position:
               
208-471
               

               
Cow position:
               
chrX:23388321-23388045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 116
               

               
Conread position:
               
208-472
               

               
Cow position:
               
chrX:12464234-12464511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 123
               

               
Conread position:
               
208-472
               

               
Cow position:
               
chrX:16464423-16464678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
213, 41
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:2047317-2047590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
36, 117
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:3082907-3082633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
38, 123
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:3360056-3360327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
36, 106
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:3466132-3465857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
36, 116
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:5333202-5332927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
36, 113
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:5865367-5865649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:8481681-8481956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:11147113-11146832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:12667103-12666824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:15122929-15122657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 119
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:15261391-15261112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:16045197-16045476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
35, 122
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:17053786-17054075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
35, 132
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:17890772-17891047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 99
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:20741401-20741123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 65
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:23279253-23279531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 123
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:26756414-26756135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 123
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:27304169-27304447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 113
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:28754111-28753832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:29171555-29171276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
36, 123
               

               
Conread position:
               
208-473
               

               
Cow position:
               
chrX:38963486-38963209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
36, 122
               

               
Conread position:
               
209-473
               

               
Cow position:
               
chrX:18221646-18221919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
217-471
               

               
Cow position:
               
chrX:23394843-23395109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
29, 109
               

               
Conread position:
               
217-473
               

               
Cow position:
               
chrX:18951496-18951226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
217-473
               

               
Cow position:
               
chrX:27317465-27317735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
217-473
               

               
Cow position:
               
chrX:32328449-32328714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
27, 113
               

               
Conread position:
               
218-473
               

               
Cow position:
               
chrX:2560709-2560443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
26, 113
               

               
Conread position:
               
218-473
               

               
Cow position:
               
chrX:30167839-30167569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
26, 113
               

               
Conread position:
               
218-473
               

               
Cow position:
               
chrX:32064926-32064663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
26, 106
               

               
Conread position:
               
218-473
               

               
Cow position:
               
chrX:35532095-35532361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 113
               

               
Conread position:
               
220-473
               

               
Cow position:
               
chrX:13407046-13406781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 80
               

               
Conread position:
               
239-473
               

               
Cow position:
               
chrX:40642482-40642721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 83
               

               
Conread position:
               
240-473
               

               
Cow position:
               
chrX:22331506-22331266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
66, 84
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chrX:10529519-10529280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
171, 81
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chrX:30164961-30164724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 81
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chrX:36194170-36194407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
180, 81
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chrX:37814418-37814655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
180, 81
               

               
Conread position:
               
241-473
               

               
Cow position:
               
chrX:39712821-39713057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
180, 81
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chrX:14597125-14597359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
179, 80
               

               
Conread position:
               
242-472
               

               
Cow position:
               
chrX:30137586-30137352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
179, 80
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chrX:672719-672487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
179, 73
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chrX:2480359-2480124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 80
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chrX:18192686-18192921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
179, 22
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chrX:21225749-21225985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
179, 80
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chrX:21492438-21492674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
175, 80
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chrX:21581711-21581947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 80
               

               
Conread position:
               
242-473
               

               
Cow position:
               
chrX:27424014-27423764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
95, 80
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chrX:16781555-16781790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 79
               

               
Conread position:
               
243-473
               

               
Cow position:
               
chrX:39697040-39697273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
178, 52
               

               
Conread position:
               
244-471
               

               
Cow position:
               
chrX:27984081-27983852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
177, 76
               

               
Conread position:
               
244-473
               

               
Cow position:
               
chrX:12185355-12185589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
176, 81
               

               
Conread position:
               
256-473
               

               
Cow position:
               
chrX:41153091-41153316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
6, 69
               

               
Conread position:
               
260-473
               

               
Cow position:
               
chrX:2118103-2117885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
161, 62
               

               
Conread position:
               
261-473
               

               
Cow position:
               
chrX:9086002-9086218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
160, 61
               

               
Conread position:
               
265-473
               

               
Cow position:
               
chrX:29941473-29941685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
149, 9
               

               
Conread position:
               
265-473
               

               
Cow position:
               
chrX:31979541-31979329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
156, 57
               

               
Conread position:
               
278-473
               

               
Cow position:
               
chrX:21661756-21661556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 44
               

               
Conread position:
               
281-473
               

               
Cow position:
               
chrX:22539729-22539532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
139, 41
               

               
Conread position:
               
305-473
               

               
Cow position:
               
chrX:26231428-26231254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
322-467
               

               
Cow position:
               
chrX:33829392-33829543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
328-473
               

               
Cow position:
               
chrX:3156162-3156011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
352-473
               

               
Cow position:
               
chrX:17664820-17664693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               
Show alignments to all cow chromosomes.