Cow genome map
| Conread name: | rret07_p14.y1 |
| Conread position: | 154-300 |
| Cow position: | chr11:9905640-9905499 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 284-422 |
| Cow position: | chr11:56868613-56868474 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 284-427 |
| Cow position: | chr11:83763876-83764017 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 88, 48 |
| Conread position: | 284-433 |
| Cow position: | chr11:17060152-17060301 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 110 |
| Conread position: | 284-437 |
| Cow position: | chr11:80006849-80006698 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 284-457 |
| Cow position: | chr11:3680892-3680719 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 284-463 |
| Cow position: | chr11:44244071-44243891 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 64 |
| Conread position: | 284-467 |
| Cow position: | chr11:9063201-9063014 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 284-471 |
| Cow position: | chr11:32317325-32317140 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 87, 28 |
| Conread position: | 284-473 |
| Cow position: | chr11:48930394-48930218 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 82, 51 |
| Conread position: | 284-483 |
| Cow position: | chr11:4484655-4484455 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 95 |
| Conread position: | 284-493 |
| Cow position: | chr11:11997450-11997646 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 284-493 |
| Cow position: | chr11:60008229-60008441 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 284-497 |
| Cow position: | chr11:27666150-27665931 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 284-498 |
| Cow position: | chr11:7443380-7443167 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 82, 148 |
| Conread position: | 284-499 |
| Cow position: | chr11:35506873-35507080 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 167, 77 |
| Conread position: | 284-499 |
| Cow position: | chr11:74216196-74215981 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 113, 121 |
| Conread position: | 284-505 |
| Cow position: | chr11:43839516-43839725 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 77, 118 |
| Conread position: | 284-515 |
| Cow position: | chr11:55465063-55464832 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 78, 112 |
| Conread position: | 284-516 |
| Cow position: | chr11:56396282-56396045 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 37 |
| Conread position: | 284-516 |
| Cow position: | chr11:80003064-80003296 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 85, 138 |
| Conread position: | 284-517 |
| Cow position: | chr11:8019975-8020207 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 90, 69 |
| Conread position: | 284-519 |
| Cow position: | chr11:45650982-45650755 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 284-520 |
| Cow position: | chr11:18370939-18371171 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 90, 24 |
| Conread position: | 284-520 |
| Cow position: | chr11:21544386-21544622 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 73, 17 |
| Conread position: | 285-497 |
| Cow position: | chr11:31126269-31126480 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 88, 17 |
| Conread position: | 286-474 |
| Cow position: | chr11:12010995-12011178 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 84, 52 |
| Conread position: | 286-493 |
| Cow position: | chr11:21849982-21849781 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 165, 51 |
| Conread position: | 286-498 |
| Cow position: | chr11:3095434-3095220 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 115 |
| Conread position: | 286-502 |
| Cow position: | chr11:86925300-86925087 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 85, 150 |
| Conread position: | 286-505 |
| Cow position: | chr11:84829739-84829522 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 163, 87 |
| Conread position: | 286-506 |
| Cow position: | chr11:33934689-33934464 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 85, 47 |
| Conread position: | 286-514 |
| Cow position: | chr11:34268055-34268276 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 167, 26 |
| Conread position: | 286-516 |
| Cow position: | chr11:25379519-25379290 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 286-516 |
| Cow position: | chr11:54668844-54669073 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 86, 141 |
| Conread position: | 286-519 |
| Cow position: | chr11:42823366-42823129 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 85, 136 |
| Conread position: | 287-478 |
| Cow position: | chr11:53270493-53270304 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 158 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 86, 45 |
| Conread position: | 287-499 |
| Cow position: | chr11:51020332-51020547 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 287-506 |
| Cow position: | chr11:54666344-54666125 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 77, 182 |
| Conread position: | 287-520 |
| Cow position: | chr11:26585992-26586232 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 59, 218 |
| Conread position: | 289-509 |
| Cow position: | chr11:81278676-81278889 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 83, 13 |
| Conread position: | 293-483 |
| Cow position: | chr11:45554583-45554399 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 158, 35 |
| Conread position: | 294-506 |
| Cow position: | chr11:32734365-32734574 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 157, 69 |
| Conread position: | 295-511 |
| Cow position: | chr11:64083144-64083353 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 297-493 |
| Cow position: | chr11:21886502-21886307 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 152, 87 |
| Conread position: | 297-506 |
| Cow position: | chr11:29014434-29014643 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 76, 150 |
| Conread position: | 299-498 |
| Cow position: | chr11:52027666-52027466 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 14 |
| Conread position: | 304-475 |
| Cow position: | chr11:14266121-14266299 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 304-493 |
| Cow position: | chr11:42682627-42682436 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 15, 169 |
| Conread position: | 304-520 |
| Cow position: | chr11:13828816-13828610 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 304-520 |
| Cow position: | chr11:37763816-37764035 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 54, 131 |
| Conread position: | 306-448 |
| Cow position: | chr11:74225944-74226089 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 65, 47 |
| Conread position: | 306-464 |
| Cow position: | chr11:30775865-30775698 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 308-483 |
| Cow position: | chr11:9550440-9550263 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 63, 166 |
| Conread position: | 308-515 |
| Cow position: | chr11:12998902-12999116 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 309-506 |
| Cow position: | chr11:42465758-42465572 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 140, 64 |
| Conread position: | 309-516 |
| Cow position: | chr11:21525497-21525694 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 144, 91 |
| Conread position: | 312-488 |
| Cow position: | chr11:27768853-27769024 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 316-470 |
| Cow position: | chr11:49216828-49216982 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 320-456 |
| Cow position: | chr11:2070698-2070836 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 320-506 |
| Cow position: | chr11:58601881-58602062 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 50, 57 |
| Conread position: | 322-499 |
| Cow position: | chr11:10977543-10977720 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 60, 56 |
| Conread position: | 328-513 |
| Cow position: | chr11:16653335-16653156 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 83 |
| Conread position: | 333-520 |
| Cow position: | chr11:45940269-45940080 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 336-519 |
| Cow position: | chr11:13216135-13216315 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 364-520 |
| Cow position: | chr11:81453623-81453465 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 52 |
Show alignments to all cow chromosomes.