Cow genome map
| Conread name: | rret07_p14.y1 |
| Conread position: | 282-511 |
| Cow position: | chr13:16040973-16040754 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 218, 95 |
| Conread position: | 283-518 |
| Cow position: | chr13:30772851-30772619 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 166, 49 |
| Conread position: | 283-519 |
| Cow position: | chr13:61121490-61121721 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 88, 68 |
| Conread position: | 284-444 |
| Cow position: | chr13:57313851-57313692 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 83, 47 |
| Conread position: | 284-445 |
| Cow position: | chr13:46131657-46131495 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 87, 26 |
| Conread position: | 284-451 |
| Cow position: | chr13:9083481-9083661 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 80, 167 |
| Conread position: | 284-461 |
| Cow position: | chr13:25981501-25981330 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 87, 47 |
| Conread position: | 284-481 |
| Cow position: | chr13:24216316-24216128 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 80, 36 |
| Conread position: | 284-482 |
| Cow position: | chr13:33767699-33767507 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 84, 147 |
| Conread position: | 284-483 |
| Cow position: | chr13:9716291-9716495 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 78, 114 |
| Conread position: | 284-487 |
| Cow position: | chr13:18052345-18052551 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 87, 191 |
| Conread position: | 284-499 |
| Cow position: | chr13:4498360-4498567 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 284-499 |
| Cow position: | chr13:21677169-21676951 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 87, 16 |
| Conread position: | 284-503 |
| Cow position: | chr13:19427187-19427409 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 43, 82 |
| Conread position: | 284-506 |
| Cow position: | chr13:6178421-6178644 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 89, 109 |
| Conread position: | 284-517 |
| Cow position: | chr13:17127396-17127166 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 88, 128 |
| Conread position: | 284-520 |
| Cow position: | chr13:1725641-1725873 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 113, 18 |
| Conread position: | 286-433 |
| Cow position: | chr13:62264158-62264299 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 85, 27 |
| Conread position: | 286-449 |
| Cow position: | chr13:24739990-24740153 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 87, 127 |
| Conread position: | 286-483 |
| Cow position: | chr13:53934926-53935124 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 99 |
| Conread position: | 286-520 |
| Cow position: | chr13:3167598-3167375 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 85, 145 |
| Conread position: | 287-514 |
| Cow position: | chr13:37829440-37829654 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 97, 19 |
| Conread position: | 289-445 |
| Cow position: | chr13:17981701-17981541 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 289-475 |
| Cow position: | chr13:9714772-9714955 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 160, 92 |
| Conread position: | 297-506 |
| Cow position: | chr13:4441481-4441264 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 74, 39 |
| Conread position: | 304-506 |
| Cow position: | chr13:16342873-16342674 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 42, 101 |
| Conread position: | 304-516 |
| Cow position: | chr13:22976904-22976690 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 305-498 |
| Cow position: | chr13:4947315-4947116 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 306-519 |
| Cow position: | chr13:29671701-29671916 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 63, 199 |
| Conread position: | 307-510 |
| Cow position: | chr13:1424057-1424266 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 65, 86 |
| Conread position: | 308-465 |
| Cow position: | chr13:41902857-41902700 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 308-506 |
| Cow position: | chr13:25883301-25883498 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 311-499 |
| Cow position: | chr13:56929591-56929778 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 50, 118 |
| Conread position: | 313-468 |
| Cow position: | chr13:26011053-26011213 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 313-514 |
| Cow position: | chr13:6923890-6924085 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 138, 73 |
| Conread position: | 314-487 |
| Cow position: | chr13:9343093-9342919 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 318-430 |
| Cow position: | chr13:20803601-20803712 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 46, 15 |
| Conread position: | 323-459 |
| Cow position: | chr13:30811692-30811834 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 328-475 |
| Cow position: | chr13:31453817-31453670 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 121, 44 |
| Conread position: | 330-479 |
| Cow position: | chr13:7310468-7310319 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 123, 17 |
| Conread position: | 330-506 |
| Cow position: | chr13:9167334-9167513 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 330-506 |
| Cow position: | chr13:22014512-22014684 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 119, 41 |
| Conread position: | 334-507 |
| Cow position: | chr13:11921329-11921503 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 335-465 |
| Cow position: | chr13:5046825-5046960 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 352-505 |
| Cow position: | chr13:9147403-9147559 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 355-492 |
| Cow position: | chr13:32985781-32985919 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 375-499 |
| Cow position: | chr13:28598673-28598798 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.