Cow genome map
| Conread name: | rret07_p14.y1 |
| Conread position: | 273-497 |
| Cow position: | chr17:16414780-16414565 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 175, 53 |
| Conread position: | 282-516 |
| Cow position: | chr17:34563974-34564196 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 171, 62 |
| Conread position: | 284-435 |
| Cow position: | chr17:28401562-28401703 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 284-450 |
| Cow position: | chr17:28403961-28403796 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 13, 105 |
| Conread position: | 284-472 |
| Cow position: | chr17:485465-485656 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 87, 124 |
| Conread position: | 284-472 |
| Cow position: | chr17:10041016-10040828 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 84, 14 |
| Conread position: | 284-473 |
| Cow position: | chr17:14009254-14009067 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 71 |
| Conread position: | 284-475 |
| Cow position: | chr17:27940181-27939985 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 174 |
| Conread position: | 284-499 |
| Cow position: | chr17:12179375-12179158 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 100 |
| Conread position: | 284-499 |
| Cow position: | chr17:23723936-23724153 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 284-502 |
| Cow position: | chr17:21956897-21956684 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 284-503 |
| Cow position: | chr17:17134598-17134813 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 32 |
| Conread position: | 284-506 |
| Cow position: | chr17:5226445-5226232 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 284-515 |
| Cow position: | chr17:14303628-14303397 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 85, 184 |
| Conread position: | 284-515 |
| Cow position: | chr17:24337245-24337473 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 29, 48 |
| Conread position: | 284-516 |
| Cow position: | chr17:37722749-37722516 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 87, 152 |
| Conread position: | 284-517 |
| Cow position: | chr17:9348718-9348955 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 67, 222 |
| Conread position: | 284-518 |
| Cow position: | chr17:5248530-5248767 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 284-519 |
| Cow position: | chr17:10831107-10830879 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 82, 167 |
| Conread position: | 284-520 |
| Cow position: | chr17:32456329-32456090 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 284-520 |
| Cow position: | chr17:43221892-43221669 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 114, 56 |
| Conread position: | 286-424 |
| Cow position: | chr17:4658464-4658601 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 287-506 |
| Cow position: | chr17:226174-226391 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 5, 50 |
| Conread position: | 287-519 |
| Cow position: | chr17:13671299-13671066 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 9, 101 |
| Conread position: | 293-499 |
| Cow position: | chr17:34322576-34322373 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 160, 37 |
| Conread position: | 295-516 |
| Cow position: | chr17:33369933-33369726 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 94 |
| Conread position: | 297-481 |
| Cow position: | chr17:16222245-16222063 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 297-497 |
| Cow position: | chr17:28861753-28861548 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 86, 50 |
| Conread position: | 297-504 |
| Cow position: | chr17:28800288-28800066 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 65, 94 |
| Conread position: | 305-493 |
| Cow position: | chr17:417578-417393 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 133 |
| Conread position: | 308-435 |
| Cow position: | chr17:27234364-27234494 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 311-511 |
| Cow position: | chr17:3174956-3175148 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 122, 65 |
| Conread position: | 314-448 |
| Cow position: | chr17:30147474-30147338 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 314-499 |
| Cow position: | chr17:7684022-7684208 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 314-516 |
| Cow position: | chr17:35038608-35038810 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 113 |
| Conread position: | 330-519 |
| Cow position: | chr17:30788488-30788677 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 119, 171 |
| Conread position: | 335-477 |
| Cow position: | chr17:20507267-20507130 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 370-511 |
| Cow position: | chr17:5317914-5318056 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
Show alignments to all cow chromosomes.