Cow genome map
| Conread name: | rret07_p14.y1 |
| Conread position: | 273-456 |
| Cow position: | chr3:16622010-16621833 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 90, 101 |
| Conread position: | 279-500 |
| Cow position: | chr3:34953671-34953889 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 96, 52 |
| Conread position: | 283-512 |
| Cow position: | chr3:3095788-3095573 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 284-433 |
| Cow position: | chr3:43431514-43431362 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 284-473 |
| Cow position: | chr3:24261687-24261499 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 91, 26 |
| Conread position: | 284-477 |
| Cow position: | chr3:54051551-54051361 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 165, 97 |
| Conread position: | 284-486 |
| Cow position: | chr3:20713785-20713985 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 284-497 |
| Cow position: | chr3:38690988-38690775 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 157, 88 |
| Conread position: | 284-498 |
| Cow position: | chr3:31151883-31151671 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 118, 124 |
| Conread position: | 284-498 |
| Cow position: | chr3:54570650-54570856 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 77, 43 |
| Conread position: | 284-499 |
| Cow position: | chr3:13478543-13478753 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 80, 54 |
| Conread position: | 284-499 |
| Cow position: | chr3:17681511-17681714 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 167, 89 |
| Conread position: | 284-499 |
| Cow position: | chr3:19559916-19559700 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 284-500 |
| Cow position: | chr3:74761241-74761461 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 85, 47 |
| Conread position: | 284-502 |
| Cow position: | chr3:31924587-31924376 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 169, 89 |
| Conread position: | 284-506 |
| Cow position: | chr3:15329404-15329180 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 160 |
| Conread position: | 284-506 |
| Cow position: | chr3:16170000-16169779 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 83, 25 |
| Conread position: | 284-506 |
| Cow position: | chr3:22866675-22866448 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 91, 19 |
| Conread position: | 284-506 |
| Cow position: | chr3:67927234-67927454 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 72, 170 |
| Conread position: | 284-515 |
| Cow position: | chr3:22850673-22850441 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 284-516 |
| Cow position: | chr3:24646211-24646442 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 169, 217 |
| Conread position: | 284-517 |
| Cow position: | chr3:7136424-7136198 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 284-519 |
| Cow position: | chr3:41402368-41402608 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 77, 199 |
| Conread position: | 284-519 |
| Cow position: | chr3:45435181-45435415 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 169 |
| Conread position: | 285-466 |
| Cow position: | chr3:54789996-54790175 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 95 |
| Conread position: | 285-466 |
| Cow position: | chr3:76381218-76381044 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 164, 25 |
| Conread position: | 285-482 |
| Cow position: | chr3:7942176-7941984 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 193, 72 |
| Conread position: | 286-432 |
| Cow position: | chr3:26531805-26531658 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 89, 50 |
| Conread position: | 286-433 |
| Cow position: | chr3:49841184-49841032 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 286-448 |
| Cow position: | chr3:56565469-56565632 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 108 |
| Conread position: | 286-508 |
| Cow position: | chr3:41946865-41946645 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 286-515 |
| Cow position: | chr3:63259952-63260172 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 142, 16 |
| Conread position: | 287-472 |
| Cow position: | chr3:40269232-40269048 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 176, 60 |
| Conread position: | 287-499 |
| Cow position: | chr3:64184747-64184956 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 86, 21 |
| Conread position: | 288-431 |
| Cow position: | chr3:41818089-41817946 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 288-493 |
| Cow position: | chr3:1670579-1670377 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 74, 115 |
| Conread position: | 288-520 |
| Cow position: | chr3:30830582-30830805 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 159, 59 |
| Conread position: | 289-514 |
| Cow position: | chr3:62560996-62561229 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 74, 221 |
| Conread position: | 289-515 |
| Cow position: | chr3:33468454-33468225 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 295-507 |
| Cow position: | chr3:37808070-37807864 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 156, 89 |
| Conread position: | 296-477 |
| Cow position: | chr3:61244019-61244204 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 76, 178 |
| Conread position: | 296-492 |
| Cow position: | chr3:45343356-45343556 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 296-493 |
| Cow position: | chr3:1498910-1499103 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 112, 65 |
| Conread position: | 296-505 |
| Cow position: | chr3:18579275-18579486 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 297-520 |
| Cow position: | chr3:84881402-84881180 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 302-520 |
| Cow position: | chr3:74110371-74110593 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 165 |
| Conread position: | 304-456 |
| Cow position: | chr3:47117188-47117341 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 304-506 |
| Cow position: | chr3:24783751-24783954 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 306-504 |
| Cow position: | chr3:48858108-48858308 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 308-427 |
| Cow position: | chr3:45609043-45609165 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 308-487 |
| Cow position: | chr3:24875263-24875432 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 66, 36 |
| Conread position: | 308-499 |
| Cow position: | chr3:34911787-34911979 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 308-520 |
| Cow position: | chr3:36729715-36729927 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 128, 39 |
| Conread position: | 309-507 |
| Cow position: | chr3:77065452-77065257 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 140, 70 |
| Conread position: | 309-507 |
| Cow position: | chr3:77067375-77067180 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 140, 70 |
| Conread position: | 311-517 |
| Cow position: | chr3:56499955-56500165 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 314-447 |
| Cow position: | chr3:54479751-54479882 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 320-500 |
| Cow position: | chr3:49784859-49785035 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 46, 96 |
| Conread position: | 326-492 |
| Cow position: | chr3:24869489-24869658 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 55 |
| Conread position: | 326-493 |
| Cow position: | chr3:16308762-16308929 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 45, 64 |
| Conread position: | 328-475 |
| Cow position: | chr3:48426347-48426198 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 329-499 |
| Cow position: | chr3:16885569-16885403 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 119, 42 |
| Conread position: | 330-519 |
| Cow position: | chr3:72550312-72550505 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 175 |
| Conread position: | 331-472 |
| Cow position: | chr3:72926190-72926041 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 333-510 |
| Cow position: | chr3:12852672-12852496 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 116, 17 |
| Conread position: | 333-519 |
| Cow position: | chr3:56024382-56024197 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 168 |
| Conread position: | 338-500 |
| Cow position: | chr3:72531674-72531836 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 33, 118 |
| Conread position: | 363-511 |
| Cow position: | chr3:57136208-57136354 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 118 |
Show alignments to all cow chromosomes.