Cow genome map
| Conread name: | rret07_p14.y1 |
| Conread position: | 271-472 |
| Cow position: | chr4:52579907-52580108 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 93, 149 |
| Conread position: | 271-499 |
| Cow position: | chr4:24087702-24087926 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 126, 13 |
| Conread position: | 281-509 |
| Cow position: | chr4:65478982-65478763 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 283-448 |
| Cow position: | chr4:45095639-45095475 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 74 |
| Conread position: | 283-473 |
| Cow position: | chr4:3245008-3245198 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 154 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 166, 89 |
| Conread position: | 283-499 |
| Cow position: | chr4:10871385-10871170 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 87 |
| Conread position: | 283-499 |
| Cow position: | chr4:11652998-11653220 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 284-411 |
| Cow position: | chr4:35072178-35072309 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 284-440 |
| Cow position: | chr4:44905022-44904862 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 284-449 |
| Cow position: | chr4:61983058-61982895 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 284-470 |
| Cow position: | chr4:21254466-21254267 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 284-482 |
| Cow position: | chr4:53661153-53660949 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 138, 89 |
| Conread position: | 284-492 |
| Cow position: | chr4:21050129-21050338 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 66, 190 |
| Conread position: | 284-498 |
| Cow position: | chr4:19151636-19151420 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 128, 45 |
| Conread position: | 284-499 |
| Cow position: | chr4:34502421-34502213 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 58, 133 |
| Conread position: | 284-499 |
| Cow position: | chr4:44635541-44635752 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 113, 61 |
| Conread position: | 284-499 |
| Cow position: | chr4:44735121-44734917 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 165, 61 |
| Conread position: | 284-499 |
| Cow position: | chr4:54314272-54314066 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 80, 109 |
| Conread position: | 284-502 |
| Cow position: | chr4:37730014-37729796 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 77 |
| Conread position: | 284-502 |
| Cow position: | chr4:62674305-62674518 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 165, 98 |
| Conread position: | 284-506 |
| Cow position: | chr4:30288358-30288570 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 165, 46 |
| Conread position: | 284-506 |
| Cow position: | chr4:63514683-63514453 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 87, 63 |
| Conread position: | 284-506 |
| Cow position: | chr4:66127309-66127097 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 284-507 |
| Cow position: | chr4:11543175-11543392 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 126, 18 |
| Conread position: | 284-507 |
| Cow position: | chr4:52706822-52707042 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 89, 47 |
| Conread position: | 284-508 |
| Cow position: | chr4:20291036-20291262 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 78, 95 |
| Conread position: | 284-514 |
| Cow position: | chr4:39011313-39011094 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 152, 52 |
| Conread position: | 284-515 |
| Cow position: | chr4:15120280-15120511 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 284-515 |
| Cow position: | chr4:29133666-29133443 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 195, 40 |
| Conread position: | 284-516 |
| Cow position: | chr4:13920074-13919844 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 101, 47 |
| Conread position: | 284-516 |
| Cow position: | chr4:48404222-48403984 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 284-519 |
| Cow position: | chr4:13772472-13772240 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 210, 52 |
| Conread position: | 284-519 |
| Cow position: | chr4:22567896-22568128 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 86, 56 |
| Conread position: | 285-471 |
| Cow position: | chr4:30223269-30223078 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 285-472 |
| Cow position: | chr4:6381260-6381070 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 285-482 |
| Cow position: | chr4:60839720-60839917 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 81, 48 |
| Conread position: | 285-509 |
| Cow position: | chr4:18521819-18521593 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 137 |
| Conread position: | 285-514 |
| Cow position: | chr4:23926736-23926517 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 286-446 |
| Cow position: | chr4:58801956-58801794 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 87, 114 |
| Conread position: | 286-487 |
| Cow position: | chr4:11571323-11571129 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 163, 16 |
| Conread position: | 286-517 |
| Cow position: | chr4:51619517-51619285 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 29, 39 |
| Conread position: | 295-499 |
| Cow position: | chr4:21415126-21414922 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 154, 83 |
| Conread position: | 295-519 |
| Cow position: | chr4:38623672-38623448 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 296-520 |
| Cow position: | chr4:43848188-43847978 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 204, 12 |
| Conread position: | 297-506 |
| Cow position: | chr4:25575962-25576179 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 300-487 |
| Cow position: | chr4:47476760-47476946 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 73, 57 |
| Conread position: | 300-506 |
| Cow position: | chr4:63795436-63795225 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 69, 36 |
| Conread position: | 304-506 |
| Cow position: | chr4:26747723-26747522 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 67, 16 |
| Conread position: | 306-507 |
| Cow position: | chr4:19207428-19207625 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 307-486 |
| Cow position: | chr4:24370400-24370218 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 308-447 |
| Cow position: | chr4:36816752-36816893 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 308-504 |
| Cow position: | chr4:33294958-33294766 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 59, 92 |
| Conread position: | 308-506 |
| Cow position: | chr4:44644902-44644700 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 310-506 |
| Cow position: | chr4:1986966-1987163 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 58, 69 |
| Conread position: | 314-487 |
| Cow position: | chr4:47409187-47409362 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 59, 142 |
| Conread position: | 315-471 |
| Cow position: | chr4:31773709-31773862 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 138, 58 |
| Conread position: | 315-497 |
| Cow position: | chr4:64697208-64697025 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 323-499 |
| Cow position: | chr4:19127773-19127952 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 328-477 |
| Cow position: | chr4:5214684-5214836 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 332-480 |
| Cow position: | chr4:28736405-28736555 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 333-520 |
| Cow position: | chr4:8615389-8615202 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 28, 141 |
| Conread position: | 350-518 |
| Cow position: | chr4:20622084-20621919 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 383-505 |
| Cow position: | chr4:58574814-58574692 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 66, 25 |
Show alignments to all cow chromosomes.