Cow genome map
| Conread name: | rret07_p14.y1 |
| Conread position: | 258-487 |
| Cow position: | chr5:25386263-25386484 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 129, 11 |
| Conread position: | 268-519 |
| Cow position: | chr5:32070076-32069820 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 278-492 |
| Cow position: | chr5:40888766-40888553 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 152, 58 |
| Conread position: | 284-417 |
| Cow position: | chr5:31784974-31785107 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 284-448 |
| Cow position: | chr5:23414187-23414028 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 156, 113 |
| Conread position: | 284-459 |
| Cow position: | chr5:18002187-18002016 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 77, 52 |
| Conread position: | 284-466 |
| Cow position: | chr5:32335990-32335805 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 87, 58 |
| Conread position: | 284-470 |
| Cow position: | chr5:51361010-51361200 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 284-472 |
| Cow position: | chr5:33283382-33283193 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 153 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 284-473 |
| Cow position: | chr5:42045269-42045458 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 115, 69 |
| Conread position: | 284-477 |
| Cow position: | chr5:31722688-31722492 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 80, 162 |
| Conread position: | 284-479 |
| Cow position: | chr5:65053719-65053913 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 166, 159 |
| Conread position: | 284-483 |
| Cow position: | chr5:35528615-35528810 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 18 |
| Conread position: | 284-486 |
| Cow position: | chr5:33471176-33470981 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 284-492 |
| Cow position: | chr5:10095742-10095522 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 284-498 |
| Cow position: | chr5:1063832-1064048 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 110 |
| Conread position: | 284-498 |
| Cow position: | chr5:18674630-18674838 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 165, 93 |
| Conread position: | 284-500 |
| Cow position: | chr5:4989660-4989877 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 87, 102 |
| Conread position: | 284-506 |
| Cow position: | chr5:7659572-7659354 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 284-506 |
| Cow position: | chr5:70609067-70609287 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 81, 47 |
| Conread position: | 284-507 |
| Cow position: | chr5:11955427-11955207 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 14, 127 |
| Conread position: | 284-513 |
| Cow position: | chr5:17507233-17507456 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 165, 17 |
| Conread position: | 284-514 |
| Cow position: | chr5:18582879-18583101 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 88, 180 |
| Conread position: | 284-514 |
| Cow position: | chr5:21517071-21516854 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 167, 33 |
| Conread position: | 284-514 |
| Cow position: | chr5:44660110-44659890 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 56, 107 |
| Conread position: | 284-514 |
| Cow position: | chr5:50770276-50770051 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 167, 111 |
| Conread position: | 284-519 |
| Cow position: | chr5:30336006-30335772 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 165, 37 |
| Conread position: | 284-520 |
| Cow position: | chr5:8232431-8232196 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 87, 70 |
| Conread position: | 284-520 |
| Cow position: | chr5:51761118-51760883 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 166, 54 |
| Conread position: | 285-506 |
| Cow position: | chr5:57291051-57290831 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 166, 94 |
| Conread position: | 285-506 |
| Cow position: | chr5:70768623-70768848 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 83, 8 |
| Conread position: | 286-482 |
| Cow position: | chr5:44491685-44491889 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 287-497 |
| Cow position: | chr5:56097042-56096830 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 84, 23 |
| Conread position: | 291-463 |
| Cow position: | chr5:49635208-49635033 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 292-494 |
| Cow position: | chr5:9675507-9675299 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 294-443 |
| Cow position: | chr5:67780989-67780841 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 78, 117 |
| Conread position: | 295-453 |
| Cow position: | chr5:65096635-65096791 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 42 |
| Conread position: | 295-499 |
| Cow position: | chr5:55195510-55195708 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 76, 39 |
| Conread position: | 295-506 |
| Cow position: | chr5:57147691-57147908 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 295-513 |
| Cow position: | chr5:9712717-9712497 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 296-474 |
| Cow position: | chr5:17829527-17829343 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 298-441 |
| Cow position: | chr5:59622913-59622765 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 298-478 |
| Cow position: | chr5:42787019-42786835 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 136 |
| Conread position: | 299-506 |
| Cow position: | chr5:52816454-52816246 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 200 |
| Conread position: | 302-472 |
| Cow position: | chr5:57783869-57784043 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 304-448 |
| Cow position: | chr5:22064702-22064847 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 304-499 |
| Cow position: | chr5:14215863-14215667 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 306-486 |
| Cow position: | chr5:66170423-66170246 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 139, 32 |
| Conread position: | 306-499 |
| Cow position: | chr5:5194478-5194671 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 307-520 |
| Cow position: | chr5:624699-624909 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 123, 21 |
| Conread position: | 308-487 |
| Cow position: | chr5:35990364-35990184 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 121, 103 |
| Conread position: | 308-520 |
| Cow position: | chr5:4329345-4329553 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 308-520 |
| Cow position: | chr5:18882995-18882789 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 64, 38 |
| Conread position: | 311-498 |
| Cow position: | chr5:11975023-11974834 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 58, 153 |
| Conread position: | 313-506 |
| Cow position: | chr5:36794530-36794352 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 136, 48 |
| Conread position: | 323-499 |
| Cow position: | chr5:31641304-31641491 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 329-497 |
| Cow position: | chr5:39327203-39327035 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 46, 107 |
| Conread position: | 330-480 |
| Cow position: | chr5:62008769-62008921 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 101 |
| Conread position: | 330-499 |
| Cow position: | chr5:61876143-61875973 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 331-498 |
| Cow position: | chr5:15806737-15806901 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 331-506 |
| Cow position: | chr5:1751156-1751329 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 76 |
| Conread position: | 335-506 |
| Cow position: | chr5:47083408-47083575 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 143, 35 |
| Conread position: | 344-502 |
| Cow position: | chr5:26509908-26509749 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 347-502 |
| Cow position: | chr5:41144847-41145004 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
Show alignments to all cow chromosomes.