Cow genome map
| Conread name: | rret07_p14.y1 |
| Conread position: | 271-499 |
| Cow position: | chr6:5516959-5516728 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 273-487 |
| Cow position: | chr6:49821606-49821824 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 91, 135 |
| Conread position: | 284-433 |
| Cow position: | chr6:12740667-12740818 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 284-445 |
| Cow position: | chr6:40033493-40033666 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 284-453 |
| Cow position: | chr6:35913319-35913484 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 112, 77 |
| Conread position: | 284-482 |
| Cow position: | chr6:30499208-30499408 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 63, 97 |
| Conread position: | 284-484 |
| Cow position: | chr6:58881410-58881611 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 89, 167 |
| Conread position: | 284-488 |
| Cow position: | chr6:30890856-30890646 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 38, 22 |
| Conread position: | 284-498 |
| Cow position: | chr6:30892565-30892350 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 92, 124 |
| Conread position: | 284-499 |
| Cow position: | chr6:54565007-54565217 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 154, 53 |
| Conread position: | 284-504 |
| Cow position: | chr6:6164725-6164949 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 83, 95 |
| Conread position: | 284-504 |
| Cow position: | chr6:57776958-57776740 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 284-505 |
| Cow position: | chr6:46627392-46627613 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 172 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 82, 142 |
| Conread position: | 284-506 |
| Cow position: | chr6:12510683-12510459 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 86, 130 |
| Conread position: | 284-506 |
| Cow position: | chr6:66320555-66320780 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 92, 104 |
| Conread position: | 284-507 |
| Cow position: | chr6:7951831-7951626 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 87, 128 |
| Conread position: | 284-510 |
| Cow position: | chr6:37734368-37734590 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 89, 131 |
| Conread position: | 284-515 |
| Cow position: | chr6:22590129-22590359 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 37, 73 |
| Conread position: | 284-520 |
| Cow position: | chr6:3434471-3434702 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 167, 86 |
| Conread position: | 284-520 |
| Cow position: | chr6:4728846-4728611 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 73 |
| Conread position: | 284-520 |
| Cow position: | chr6:58949685-58949466 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 63 |
| Conread position: | 285-456 |
| Cow position: | chr6:2665371-2665198 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 80, 138 |
| Conread position: | 285-506 |
| Cow position: | chr6:33546392-33546615 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 286-434 |
| Cow position: | chr6:50682973-50682820 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 286-472 |
| Cow position: | chr6:2088652-2088847 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 60, 114 |
| Conread position: | 286-499 |
| Cow position: | chr6:55326457-55326249 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 162, 85 |
| Conread position: | 287-432 |
| Cow position: | chr6:46250603-46250456 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 287-433 |
| Cow position: | chr6:15961735-15961584 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 287-497 |
| Cow position: | chr6:62789409-62789623 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 79, 152 |
| Conread position: | 287-506 |
| Cow position: | chr6:17446137-17446341 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 289-466 |
| Cow position: | chr6:47156392-47156573 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 289-487 |
| Cow position: | chr6:30945956-30945761 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 152, 93 |
| Conread position: | 290-516 |
| Cow position: | chr6:51111304-51111525 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 110, 22 |
| Conread position: | 291-515 |
| Cow position: | chr6:36273172-36273397 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 295-466 |
| Cow position: | chr6:1562213-1562387 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 295-497 |
| Cow position: | chr6:42574694-42574889 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 154, 101 |
| Conread position: | 295-498 |
| Cow position: | chr6:6078892-6078694 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 295-499 |
| Cow position: | chr6:59330351-59330144 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 74, 52 |
| Conread position: | 295-502 |
| Cow position: | chr6:2819730-2819510 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 295-520 |
| Cow position: | chr6:35406935-35406710 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 73, 36 |
| Conread position: | 295-520 |
| Cow position: | chr6:36918105-36917880 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 78, 159 |
| Conread position: | 296-492 |
| Cow position: | chr6:52121756-52121949 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 80, 61 |
| Conread position: | 296-520 |
| Cow position: | chr6:14937734-14937508 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 70, 42 |
| Conread position: | 297-506 |
| Cow position: | chr6:46557302-46557083 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 71, 117 |
| Conread position: | 298-475 |
| Cow position: | chr6:47134195-47134376 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 52 |
| Conread position: | 299-506 |
| Cow position: | chr6:57046700-57046501 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 70, 139 |
| Conread position: | 304-499 |
| Cow position: | chr6:493512-493708 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 306-483 |
| Cow position: | chr6:31805579-31805755 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 306-499 |
| Cow position: | chr6:14098345-14098532 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 142, 63 |
| Conread position: | 307-415 |
| Cow position: | chr6:23767640-23767532 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 308-505 |
| Cow position: | chr6:31207171-31206975 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 53 |
| Conread position: | 308-505 |
| Cow position: | chr6:59068540-59068340 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 308-506 |
| Cow position: | chr6:55450652-55450459 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 311-472 |
| Cow position: | chr6:8565299-8565460 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 313-466 |
| Cow position: | chr6:49752128-49752275 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 136, 59 |
| Conread position: | 313-499 |
| Cow position: | chr6:40157063-40156877 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 60 |
| Conread position: | 315-478 |
| Cow position: | chr6:37854472-37854637 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 54, 116 |
| Conread position: | 315-516 |
| Cow position: | chr6:37644666-37644867 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 316-492 |
| Cow position: | chr6:37519149-37519327 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 7, 25 |
| Conread position: | 318-475 |
| Cow position: | chr6:419464-419314 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 319-499 |
| Cow position: | chr6:54634241-54634062 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 45, 81 |
| Conread position: | 321-499 |
| Cow position: | chr6:44771257-44771439 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 322-470 |
| Cow position: | chr6:56367938-56367786 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 338-506 |
| Cow position: | chr6:7225508-7225338 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 338-520 |
| Cow position: | chr6:1183137-1183320 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 9 |
| Conread position: | 341-506 |
| Cow position: | chr6:9470263-9470431 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 30, 43 |
| Conread position: | 347-500 |
| Cow position: | chr6:2639883-2639723 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 354-508 |
| Cow position: | chr6:47847248-47847094 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 60 |
| Conread position: | 364-520 |
| Cow position: | chr6:53359248-53359404 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 138 |
| Conread position: | 370-497 |
| Cow position: | chr6:12428431-12428303 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 373-520 |
| Cow position: | chr6:16337618-16337473 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 391-502 |
| Cow position: | chr6:20177937-20178049 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 391-518 |
| Cow position: | chr6:4084223-4084096 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 58, 110 |
Show alignments to all cow chromosomes.