Cow genome map
| Conread name: | rret07_p14.y1 |
| Conread position: | 273-480 |
| Cow position: | chr9:49001950-49001741 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 113, 7 |
| Conread position: | 273-507 |
| Cow position: | chr9:55262562-55262797 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 181 |
| Conread position: | 274-480 |
| Cow position: | chr9:47022457-47022666 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 95, 140 |
| Conread position: | 278-514 |
| Cow position: | chr9:23988902-23988672 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 30 |
| Conread position: | 282-516 |
| Cow position: | chr9:9556311-9556089 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 171, 62 |
| Conread position: | 283-428 |
| Cow position: | chr9:58655048-58654901 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 283-472 |
| Cow position: | chr9:12890177-12889989 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 166, 123 |
| Conread position: | 284-432 |
| Cow position: | chr9:32415243-32415390 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 284-456 |
| Cow position: | chr9:53532111-53532284 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 284-466 |
| Cow position: | chr9:9548155-9548336 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 169, 151 |
| Conread position: | 284-497 |
| Cow position: | chr9:25465081-25465293 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 76, 112 |
| Conread position: | 284-497 |
| Cow position: | chr9:54717295-54717506 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 284-498 |
| Cow position: | chr9:34674724-34674519 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 45 |
| Conread position: | 284-499 |
| Cow position: | chr9:3204137-3203918 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 284-499 |
| Cow position: | chr9:26353230-26353453 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 284-502 |
| Cow position: | chr9:32688815-32689033 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 85, 63 |
| Conread position: | 284-506 |
| Cow position: | chr9:9784417-9784637 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 87, 18 |
| Conread position: | 284-511 |
| Cow position: | chr9:4677504-4677742 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 284-516 |
| Cow position: | chr9:38350265-38350032 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 87, 187 |
| Conread position: | 285-474 |
| Cow position: | chr9:10355565-10355756 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 285-486 |
| Cow position: | chr9:15962271-15962485 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 286-448 |
| Cow position: | chr9:62301921-62302088 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 286-475 |
| Cow position: | chr9:47447728-47447535 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 83, 64 |
| Conread position: | 286-498 |
| Cow position: | chr9:56740513-56740715 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 165, 16 |
| Conread position: | 286-501 |
| Cow position: | chr9:16253039-16253245 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 86, 50 |
| Conread position: | 286-502 |
| Cow position: | chr9:39646989-39646768 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 287-499 |
| Cow position: | chr9:35224623-35224408 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 79, 181 |
| Conread position: | 287-506 |
| Cow position: | chr9:39236497-39236710 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 289-515 |
| Cow position: | chr9:10310985-10311213 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 190 |
| Conread position: | 295-443 |
| Cow position: | chr9:1930026-1929875 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 295-499 |
| Cow position: | chr9:6421280-6421071 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 297-499 |
| Cow position: | chr9:31968919-31969123 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 53 |
| Conread position: | 304-480 |
| Cow position: | chr9:18577255-18577080 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 67, 76 |
| Conread position: | 304-498 |
| Cow position: | chr9:20700223-20700035 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 146, 29 |
| Conread position: | 307-506 |
| Cow position: | chr9:37256187-37255979 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 47, 51 |
| Conread position: | 307-516 |
| Cow position: | chr9:51159698-51159488 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 63, 180 |
| Conread position: | 311-483 |
| Cow position: | chr9:10150071-10150243 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 138, 9 |
| Conread position: | 314-472 |
| Cow position: | chr9:49826566-49826411 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 314-499 |
| Cow position: | chr9:47073709-47073892 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 57, 86 |
| Conread position: | 321-481 |
| Cow position: | chr9:27892631-27892794 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 325-516 |
| Cow position: | chr9:34937523-34937339 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 124, 25 |
| Conread position: | 326-506 |
| Cow position: | chr9:56023420-56023598 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 333-475 |
| Cow position: | chr9:24998086-24998228 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 120, 28 |
| Conread position: | 333-506 |
| Cow position: | chr9:15484012-15484187 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 79 |
| Conread position: | 337-506 |
| Cow position: | chr9:1976839-1977008 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 369-509 |
| Cow position: | chr9:62034638-62034495 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.