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Cow genome map

           
Conread name:
           
rret16_g12.y1
        

               
Conread position:
               
1-132
               

               
Cow position:
               
chr1:85550079-85550216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
1-138
               

               
Cow position:
               
chr1:40069235-40069098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
19, 68
               

               
Conread position:
               
1-146
               

               
Cow position:
               
chr1:86110738-86110884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
1-146
               

               
Cow position:
               
chr1:86682561-86682716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr1:42175721-42175564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-155
               

               
Cow position:
               
chr1:85647781-85647944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr1:12978681-12978512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
17, 167
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr1:91874913-91875085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
68, 124
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr1:24445628-24445811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr1:84910632-84910816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 50
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr1:89083104-89082921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
68, 29
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr1:69678328-69678525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
15, 72
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:5597209-5597400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:42887278-42887464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
68, 20
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr1:89437939-89438137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 45
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:50930976-50931171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
19, 142
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:78857330-78857525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
68, 20
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:97954469-97954651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 45
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:34300552-34300751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 127
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:63434807-63435013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
21, 116
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:69539690-69539495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
68, 20
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:70538610-70538400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:73960702-73960498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:88652630-88652427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
25, 49
               

               
Conread position:
               
1-196
               

               
Cow position:
               
chr1:89509922-89510136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
17, 50
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:1403482-1403676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 95
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:10778562-10778369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
19, 48
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:27145652-27145858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:39068957-39069155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
26, 147
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:47233479-47233679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
20, 146
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:52039637-52039432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 76
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:53671738-53671954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
20, 109
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:55135830-55135629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
16, 89
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:57900742-57900945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:62291699-62291890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
70, 22
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:71078961-71079161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
19, 35
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:90864294-90864504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:98551719-98551509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
17, 194
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:100800351-100800151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
19, 39
               

               
Conread position:
               
1-197
               

               
Cow position:
               
chr1:102825818-102826018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr1:5135710-5135901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
154, 22
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:39510059-39510269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
125, 68
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:71818462-71818681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
1-211
               

               
Cow position:
               
chr1:82884394-82884611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:3790068-3790277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 124
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr1:99039356-99039571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
19, 183
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr1:19998042-19998284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
10, 85
               

               
Conread position:
               
2-157
               

               
Cow position:
               
chr1:89508547-89508392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
67, 19
               

               
Conread position:
               
2-184
               

               
Cow position:
               
chr1:13810645-13810457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
2-188
               

               
Cow position:
               
chr1:89497955-89497770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr1:81471132-81470929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
2-195
               

               
Cow position:
               
chr1:3456868-3456670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
18, 60
               

               
Conread position:
               
2-195
               

               
Cow position:
               
chr1:84170475-84170285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
31, 70
               

               
Conread position:
               
2-197
               

               
Cow position:
               
chr1:74822445-74822247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
24, 67
               

               
Conread position:
               
3-184
               

               
Cow position:
               
chr1:724737-724543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 123
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chr1:41697055-41696850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chr1:82936600-82936786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
16, 38
               

               
Conread position:
               
3-197
               

               
Cow position:
               
chr1:95654716-95654920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
4-169
               

               
Cow position:
               
chr1:95178950-95178774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 138
               

               
Conread position:
               
4-195
               

               
Cow position:
               
chr1:30413582-30413385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
4-196
               

               
Cow position:
               
chr1:16855703-16855894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
5-197
               

               
Cow position:
               
chr1:71045750-71045550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
6-196
               

               
Cow position:
               
chr1:3035005-3035196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
65, 25
               

               
Conread position:
               
6-211
               

               
Cow position:
               
chr1:72304386-72304590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
17, 6
               

               
Conread position:
               
6-234
               

               
Cow position:
               
chr1:22448599-22448828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
63, 22
               

               
Conread position:
               
7-196
               

               
Cow position:
               
chr1:80900108-80899904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
7-197
               

               
Cow position:
               
chr1:61564787-61564588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
7-197
               

               
Cow position:
               
chr1:81290495-81290314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
17, 63
               

               
Conread position:
               
8-195
               

               
Cow position:
               
chr1:68817810-68818001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
10-132
               

               
Cow position:
               
chr1:89448886-89448759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
10-175
               

               
Cow position:
               
chr1:70434985-70434817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
10-178
               

               
Cow position:
               
chr1:59518908-59518736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
11, 160
               

               
Conread position:
               
10-181
               

               
Cow position:
               
chr1:43703395-43703226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 130
               

               
Conread position:
               
10-189
               

               
Cow position:
               
chr1:68618945-68619134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
10-196
               

               
Cow position:
               
chr1:45535693-45535498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
10-196
               

               
Cow position:
               
chr1:98594559-98594367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr1:6077887-6077690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr1:19482095-19482277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr1:29935398-29935586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
18, 49
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr1:45288885-45289078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
59, 108
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr1:48105444-48105638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr1:53458684-53458502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
11, 129
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr1:60707390-60707199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
91, 58
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr1:81355719-81355908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 83
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr1:89349951-89349773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 119
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr1:91816785-91816978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
91, 73
               

               
Conread position:
               
10-197
               

               
Cow position:
               
chr1:94404200-94404012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
10, 132
               

               
Conread position:
               
10-211
               

               
Cow position:
               
chr1:61741981-61742186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
12, 80
               

               
Conread position:
               
10-212
               

               
Cow position:
               
chr1:34686176-34685972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
59, 11
               

               
Conread position:
               
10-234
               

               
Cow position:
               
chr1:666352-666116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
11-148
               

               
Cow position:
               
chr1:80311451-80311315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
130, 20
               

               
Conread position:
               
11-185
               

               
Cow position:
               
chr1:102113118-102113301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
11-194
               

               
Cow position:
               
chr1:45555350-45555162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
11-195
               

               
Cow position:
               
chr1:43505510-43505321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
58, 154
               

               
Conread position:
               
11-195
               

               
Cow position:
               
chr1:87216446-87216260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
10, 163
               

               
Conread position:
               
11-196
               

               
Cow position:
               
chr1:89381261-89381075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 153
               

               
Conread position:
               
11-197
               

               
Cow position:
               
chr1:3720448-3720631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
58, 120
               

               
Conread position:
               
11-197
               

               
Cow position:
               
chr1:20384634-20384825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
11-197
               

               
Cow position:
               
chr1:63390787-63390978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
11-197
               

               
Cow position:
               
chr1:89342008-89342197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
11, 121
               

               
Conread position:
               
12-195
               

               
Cow position:
               
chr1:56643607-56643791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
129, 19
               

               
Conread position:
               
12-197
               

               
Cow position:
               
chr1:14379550-14379734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
57, 127
               

               
Conread position:
               
12-197
               

               
Cow position:
               
chr1:85162564-85162752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
12-197
               

               
Cow position:
               
chr1:100393182-100393369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
127, 54
               

               
Conread position:
               
12-214
               

               
Cow position:
               
chr1:78811023-78810814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 46
               

               
Conread position:
               
14-157
               

               
Cow position:
               
chr1:50907413-50907556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
14-198
               

               
Cow position:
               
chr1:19885364-19885179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
54, 69
               

               
Conread position:
               
15-139
               

               
Cow position:
               
chr1:91023486-91023613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
15-193
               

               
Cow position:
               
chr1:12871031-12871207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
54, 35
               

               
Conread position:
               
15-195
               

               
Cow position:
               
chr1:81913171-81913354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
18, 56
               

               
Conread position:
               
15-197
               

               
Cow position:
               
chr1:197026-197212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
117, 52
               

               
Conread position:
               
15-197
               

               
Cow position:
               
chr1:1981134-1981314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
54, 11
               

               
Conread position:
               
15-197
               

               
Cow position:
               
chr1:41056658-41056480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
126, 51
               

               
Conread position:
               
15-197
               

               
Cow position:
               
chr1:50634419-50634610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
15-234
               

               
Cow position:
               
chr1:61391806-61392035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
8, 177
               

               
Conread position:
               
16-148
               

               
Cow position:
               
chr1:88913299-88913162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
16-197
               

               
Cow position:
               
chr1:12595927-12596105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
53, 11
               

               
Conread position:
               
16-197
               

               
Cow position:
               
chr1:25383642-25383458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
52, 6
               

               
Conread position:
               
16-197
               

               
Cow position:
               
chr1:42873974-42874151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
125, 41
               

               
Conread position:
               
16-197
               

               
Cow position:
               
chr1:68855143-68854970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
16-197
               

               
Cow position:
               
chr1:71796932-71797104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
9, 52
               

               
Conread position:
               
16-197
               

               
Cow position:
               
chr1:98563141-98562956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
16-210
               

               
Cow position:
               
chr1:41004381-41004585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
16-212
               

               
Cow position:
               
chr1:101714095-101713898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
7, 43
               

               
Conread position:
               
17-184
               

               
Cow position:
               
chr1:33331110-33331280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
52, 13
               

               
Conread position:
               
17-185
               

               
Cow position:
               
chr1:83072414-83072251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
124, 11
               

               
Conread position:
               
17-190
               

               
Cow position:
               
chr1:32244422-32244602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
53, 14
               

               
Conread position:
               
17-197
               

               
Cow position:
               
chr1:40497553-40497375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
17-197
               

               
Cow position:
               
chr1:47009011-47008826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
17-199
               

               
Cow position:
               
chr1:1956353-1956534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
18, 53
               

               
Conread position:
               
17-234
               

               
Cow position:
               
chr1:56225446-56225233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
50, 120
               

               
Conread position:
               
18-197
               

               
Cow position:
               
chr1:72068859-72069031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
17, 120
               

               
Conread position:
               
18-214
               

               
Cow position:
               
chr1:62964254-62964057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
51, 33
               

               
Conread position:
               
19-197
               

               
Cow position:
               
chr1:51836550-51836367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
9, 141
               

               
Conread position:
               
20-207
               

               
Cow position:
               
chr1:4414231-4414422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
21-193
               

               
Cow position:
               
chr1:84255739-84255554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
21-197
               

               
Cow position:
               
chr1:68253566-68253387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
21-197
               

               
Cow position:
               
chr1:70380168-70380350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
22-194
               

               
Cow position:
               
chr1:67821236-67821411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
47, 103
               

               
Conread position:
               
22-197
               

               
Cow position:
               
chr1:68217389-68217563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
119, 46
               

               
Conread position:
               
22-197
               

               
Cow position:
               
chr1:85361836-85361651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
23-165
               

               
Cow position:
               
chr1:87211917-87211773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
23-187
               

               
Cow position:
               
chr1:96277079-96277249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
23-197
               

               
Cow position:
               
chr1:29671550-29671728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
76, 15
               

               
Conread position:
               
24-157
               

               
Cow position:
               
chr1:31960198-31960060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
24-193
               

               
Cow position:
               
chr1:26178840-26179015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 44
               

               
Conread position:
               
28-197
               

               
Cow position:
               
chr1:16972874-16973043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
113, 6
               

               
Conread position:
               
28-197
               

               
Cow position:
               
chr1:98030883-98030710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 67
               

               
Conread position:
               
31-187
               

               
Cow position:
               
chr1:7350508-7350344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
31-195
               

               
Cow position:
               
chr1:71946409-71946573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
38, 80
               

               
Conread position:
               
31-196
               

               
Cow position:
               
chr1:51968426-51968267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
31-196
               

               
Cow position:
               
chr1:85028918-85028756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
110, 38
               

               
Conread position:
               
31-197
               

               
Cow position:
               
chr1:81563702-81563529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
38, 166
               

               
Conread position:
               
31-234
               

               
Cow position:
               
chr1:81569066-81569280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
38, 9
               

               
Conread position:
               
32-197
               

               
Cow position:
               
chr1:53397950-53397783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
109, 35
               

               
Conread position:
               
32-210
               

               
Cow position:
               
chr1:95176900-95176717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
109, 39
               

               
Conread position:
               
32-239
               

               
Cow position:
               
chr1:56711654-56711867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
37, 137
               

               
Conread position:
               
33-197
               

               
Cow position:
               
chr1:69415749-69415922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
38, 49
               

               
Conread position:
               
35-184
               

               
Cow position:
               
chr1:24413407-24413248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
36-181
               

               
Cow position:
               
chr1:75199102-75198956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
41-197
               

               
Cow position:
               
chr1:21093048-21092887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
43-193
               

               
Cow position:
               
chr1:36613321-36613475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
44-197
               

               
Cow position:
               
chr1:25281729-25281880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
46-197
               

               
Cow position:
               
chr1:56618727-56618883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
46-201
               

               
Cow position:
               
chr1:19516454-19516613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
29, 130
               

               
Conread position:
               
66-197
               

               
Cow position:
               
chr1:58439121-58439253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
24, 95
               

               
Conread position:
               
68-195
               

               
Cow position:
               
chr1:99543123-99543251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
80-224
               

               
Cow position:
               
chr1:62996408-62996262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
84-234
               

               
Cow position:
               
chr1:7022367-7022215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
88-197
               

               
Cow position:
               
chr1:53650800-53650685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
92-197
               

               
Cow position:
               
chr1:99104982-99105088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
93-197
               

               
Cow position:
               
chr1:81579667-81579559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
42, 69
               

               
Conread position:
               
93-212
               

               
Cow position:
               
chr1:71716079-71715954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               
Show alignments to all cow chromosomes.