Cow genome map
| Conread name: | rret16_g12.y1 |
| Conread position: | 1-156 |
| Cow position: | chr12:25917318-25917471 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 36 |
| Conread position: | 1-161 |
| Cow position: | chr12:24440770-24440606 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 15, 27 |
| Conread position: | 1-169 |
| Cow position: | chr12:4116444-4116272 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 86 |
| Conread position: | 1-178 |
| Cow position: | chr12:45820411-45820593 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 73 |
| Conread position: | 1-179 |
| Cow position: | chr12:24663069-24662884 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 24, 43 |
| Conread position: | 1-188 |
| Cow position: | chr12:4809258-4809065 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 1-190 |
| Cow position: | chr12:17881816-17881624 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 1-195 |
| Cow position: | chr12:19372153-19372353 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 1-196 |
| Cow position: | chr12:26317420-26317218 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 19, 101 |
| Conread position: | 1-197 |
| Cow position: | chr12:6410780-6410977 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 19, 137 |
| Conread position: | 1-197 |
| Cow position: | chr12:18123624-18123437 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 164 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 140, 19 |
| Conread position: | 1-197 |
| Cow position: | chr12:19691276-19691487 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-197 |
| Cow position: | chr12:22285167-22285350 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 114 |
| Conread position: | 1-197 |
| Cow position: | chr12:28582549-28582741 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 126 |
| Conread position: | 1-197 |
| Cow position: | chr12:30805808-30805609 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 19, 140 |
| Conread position: | 1-197 |
| Cow position: | chr12:38010113-38010298 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 67, 26 |
| Conread position: | 1-197 |
| Cow position: | chr12:39465534-39465329 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 1-211 |
| Cow position: | chr12:18577794-18577586 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 15, 68 |
| Conread position: | 1-212 |
| Cow position: | chr12:29770617-29770836 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 202 |
| Conread position: | 1-214 |
| Cow position: | chr12:19502473-19502686 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 140, 71 |
| Conread position: | 2-197 |
| Cow position: | chr12:17001212-17001009 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 13 |
| Conread position: | 3-181 |
| Cow position: | chr12:38454862-38454685 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 3-202 |
| Cow position: | chr12:34161367-34161162 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 136 |
| Conread position: | 3-210 |
| Cow position: | chr12:20326725-20326508 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 4-130 |
| Cow position: | chr12:19507577-19507451 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 4-168 |
| Cow position: | chr12:36544700-36544869 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 93 |
| Conread position: | 4-197 |
| Cow position: | chr12:5635501-5635697 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 5-195 |
| Cow position: | chr12:18518614-18518424 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 28, 145 |
| Conread position: | 7-176 |
| Cow position: | chr12:27037506-27037677 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 7-197 |
| Cow position: | chr12:5906000-5905808 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 160 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 28, 88 |
| Conread position: | 7-197 |
| Cow position: | chr12:11056819-11056627 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 131, 67 |
| Conread position: | 7-197 |
| Cow position: | chr12:29411545-29411738 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 10-168 |
| Cow position: | chr12:30210425-30210258 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 35 |
| Conread position: | 10-177 |
| Cow position: | chr12:3906416-3906239 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 10-193 |
| Cow position: | chr12:34673398-34673575 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 11, 33 |
| Conread position: | 10-195 |
| Cow position: | chr12:25320864-25320676 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 10-195 |
| Cow position: | chr12:25561312-25561123 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 161 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 9, 14 |
| Conread position: | 10-195 |
| Cow position: | chr12:35368584-35368396 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 132 |
| Conread position: | 10-197 |
| Cow position: | chr12:6489046-6489226 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 9, 59 |
| Conread position: | 10-197 |
| Cow position: | chr12:17031558-17031372 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 16, 154 |
| Conread position: | 10-197 |
| Cow position: | chr12:31959828-31959645 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 10-197 |
| Cow position: | chr12:41214379-41214571 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 154 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 10-223 |
| Cow position: | chr12:42879636-42879430 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 11-154 |
| Cow position: | chr12:2805108-2805250 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 21 |
| Conread position: | 11-189 |
| Cow position: | chr12:28471580-28471398 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 12-185 |
| Cow position: | chr12:35669533-35669703 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 107 |
| Conread position: | 12-195 |
| Cow position: | chr12:30170608-30170420 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 12-195 |
| Cow position: | chr12:44622294-44622112 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 57, 142 |
| Conread position: | 12-196 |
| Cow position: | chr12:6720264-6720071 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 12-197 |
| Cow position: | chr12:3056072-3055888 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 129, 56 |
| Conread position: | 12-197 |
| Cow position: | chr12:6164083-6164278 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 158 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 12-197 |
| Cow position: | chr12:26223047-26223235 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 8, 57 |
| Conread position: | 12-197 |
| Cow position: | chr12:43942413-43942231 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 58 |
| Conread position: | 15-163 |
| Cow position: | chr12:33851295-33851140 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 15-212 |
| Cow position: | chr12:9710272-9710469 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 16-197 |
| Cow position: | chr12:17008141-17007948 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 12, 68 |
| Conread position: | 16-261 |
| Cow position: | chr12:731000-731251 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 17, 134 |
| Conread position: | 17-196 |
| Cow position: | chr12:32714979-32714794 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 17-211 |
| Cow position: | chr12:15122257-15122073 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 52, 117 |
| Conread position: | 21-193 |
| Cow position: | chr12:2813157-2812977 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 22-132 |
| Cow position: | chr12:38679024-38678915 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 22-217 |
| Cow position: | chr12:3994886-3994679 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 23-197 |
| Cow position: | chr12:5631953-5632123 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 23-197 |
| Cow position: | chr12:42167577-42167396 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 46, 99 |
| Conread position: | 32-196 |
| Cow position: | chr12:34473704-34473863 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 37, 99 |
| Conread position: | 33-197 |
| Cow position: | chr12:25177664-25177843 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 37-149 |
| Cow position: | chr12:31882262-31882147 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 32, 22 |
| Conread position: | 44-197 |
| Cow position: | chr12:5135053-5134890 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 44-197 |
| Cow position: | chr12:30064856-30064695 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 52-197 |
| Cow position: | chr12:40307598-40307447 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 57-197 |
| Cow position: | chr12:25805219-25805359 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 84, 15 |
| Conread position: | 78-223 |
| Cow position: | chr12:26777283-26777429 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 53 |
Show alignments to all cow chromosomes.