Cow genome map
| Conread name: | rret16_g12.y1 |
| Conread position: | 1-146 |
| Cow position: | chr15:5726421-5726573 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-163 |
| Cow position: | chr15:26117617-26117769 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 1-176 |
| Cow position: | chr15:5715647-5715831 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-194 |
| Cow position: | chr15:21908031-21908234 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-194 |
| Cow position: | chr15:23487072-23486873 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 114 |
| Conread position: | 1-195 |
| Cow position: | chr15:36422754-36422955 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 29, 95 |
| Conread position: | 1-196 |
| Cow position: | chr15:21522882-21523089 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 176 |
| Conread position: | 1-197 |
| Cow position: | chr15:4093837-4093624 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-197 |
| Cow position: | chr15:5234905-5234704 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-197 |
| Cow position: | chr15:5730037-5730237 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 20, 109 |
| Conread position: | 1-197 |
| Cow position: | chr15:11011507-11011309 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 19, 151 |
| Conread position: | 1-197 |
| Cow position: | chr15:12304734-12304941 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-197 |
| Cow position: | chr15:15708018-15707818 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 16, 144 |
| Conread position: | 1-197 |
| Cow position: | chr15:20081867-20082060 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 140, 26 |
| Conread position: | 1-197 |
| Cow position: | chr15:23702875-23703073 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 1-197 |
| Cow position: | chr15:25208661-25208465 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 134, 22 |
| Conread position: | 1-197 |
| Cow position: | chr15:31857687-31857892 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 164 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-212 |
| Cow position: | chr15:3700193-3699967 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-234 |
| Cow position: | chr15:6530752-6530504 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 191 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 19, 91 |
| Conread position: | 2-149 |
| Cow position: | chr15:16261410-16261565 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 2-179 |
| Cow position: | chr15:25907016-25907195 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 2-211 |
| Cow position: | chr15:17870185-17869981 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 67, 130 |
| Conread position: | 3-177 |
| Cow position: | chr15:41360848-41360682 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 3-197 |
| Cow position: | chr15:16543349-16543164 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 70, 17 |
| Conread position: | 4-173 |
| Cow position: | chr15:30986180-30986015 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 4-197 |
| Cow position: | chr15:32287656-32287458 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 5-188 |
| Cow position: | chr15:39436324-39436503 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 111 |
| Conread position: | 5-192 |
| Cow position: | chr15:23696811-23696622 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 15, 137 |
| Conread position: | 5-197 |
| Cow position: | chr15:22532340-22532541 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 6-192 |
| Cow position: | chr15:36259498-36259307 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 6-197 |
| Cow position: | chr15:34104378-34104566 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 63, 22 |
| Conread position: | 9-197 |
| Cow position: | chr15:47821918-47822101 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 60, 14 |
| Conread position: | 10-127 |
| Cow position: | chr15:36353777-36353897 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 10-195 |
| Cow position: | chr15:9871308-9871112 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 10-195 |
| Cow position: | chr15:13515475-13515670 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 10-196 |
| Cow position: | chr15:44051392-44051198 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 40 |
| Conread position: | 10-196 |
| Cow position: | chr15:50302291-50302484 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 157 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 10-197 |
| Cow position: | chr15:39598351-39598538 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 10-197 |
| Cow position: | chr15:40009545-40009350 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 158 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 11-187 |
| Cow position: | chr15:33643205-33643376 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 11-189 |
| Cow position: | chr15:5420773-5420590 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 11, 63 |
| Conread position: | 11-196 |
| Cow position: | chr15:16823046-16823236 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 23, 150 |
| Conread position: | 11-197 |
| Cow position: | chr15:20391166-20390978 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 11-197 |
| Cow position: | chr15:26903306-26903494 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 121 |
| Conread position: | 11-197 |
| Cow position: | chr15:37931655-37931469 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 11, 123 |
| Conread position: | 11-197 |
| Cow position: | chr15:43913981-43913784 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 9, 21 |
| Conread position: | 11-239 |
| Cow position: | chr15:7192144-7191917 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 12-185 |
| Cow position: | chr15:42789035-42788862 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 116, 11 |
| Conread position: | 12-197 |
| Cow position: | chr15:6586606-6586413 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 12-197 |
| Cow position: | chr15:19279978-19279793 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 12-197 |
| Cow position: | chr15:20472436-20472246 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 12-234 |
| Cow position: | chr15:40957687-40957919 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 12-245 |
| Cow position: | chr15:29272300-29272538 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 14-197 |
| Cow position: | chr15:30316469-30316289 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 126, 46 |
| Conread position: | 15-197 |
| Cow position: | chr15:14870856-14871046 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 16-185 |
| Cow position: | chr15:7456811-7456985 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 16-194 |
| Cow position: | chr15:23114954-23115132 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 53, 129 |
| Conread position: | 16-197 |
| Cow position: | chr15:236852-237028 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 125, 59 |
| Conread position: | 16-197 |
| Cow position: | chr15:1722734-1722551 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 54, 172 |
| Conread position: | 16-197 |
| Cow position: | chr15:24044982-24044798 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 17-132 |
| Cow position: | chr15:9879276-9879162 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 57, 19 |
| Conread position: | 17-188 |
| Cow position: | chr15:24128149-24128321 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 124, 13 |
| Conread position: | 20-195 |
| Cow position: | chr15:17763025-17763198 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 112 |
| Conread position: | 20-197 |
| Cow position: | chr15:10456894-10456710 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 49, 150 |
| Conread position: | 21-241 |
| Cow position: | chr15:30047423-30047196 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 48, 176 |
| Conread position: | 25-193 |
| Cow position: | chr15:8962132-8962296 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 25-197 |
| Cow position: | chr15:10335880-10336055 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 145 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 44, 113 |
| Conread position: | 31-178 |
| Cow position: | chr15:38877172-38877022 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 110, 40 |
| Conread position: | 31-186 |
| Cow position: | chr15:5535885-5536039 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 108 |
| Conread position: | 33-198 |
| Cow position: | chr15:39363881-39363715 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 33-214 |
| Cow position: | chr15:22168189-22168375 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 35-197 |
| Cow position: | chr15:11658435-11658265 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 145 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 41-223 |
| Cow position: | chr15:13669753-13669576 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 100, 24 |
| Conread position: | 46-197 |
| Cow position: | chr15:26158472-26158317 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 47-194 |
| Cow position: | chr15:47843962-47843810 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 22, 28 |
| Conread position: | 48-196 |
| Cow position: | chr15:30982072-30982215 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 68-197 |
| Cow position: | chr15:28038926-28039056 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 69-197 |
| Cow position: | chr15:39090441-39090563 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 75-197 |
| Cow position: | chr15:5658336-5658463 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 87-197 |
| Cow position: | chr15:16476560-16476445 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 88-234 |
| Cow position: | chr15:52198118-52197974 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 130, 54 |
| Conread position: | 93-197 |
| Cow position: | chr15:10450711-10450602 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.