Cow genome map

Conread name: rret16_g12.y1

Conread position: 1-127
Cow position: chr20:7738195-7738323 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 67, 27

Conread position: 1-184
Cow position: chr20:5636517-5636325 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 151
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 28, 0

Conread position: 1-185
Cow position: chr20:15568913-15569106 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 1-186
Cow position: chr20:20242116-20241943 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 155
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 140, 19

Conread position: 1-187
Cow position: chr20:10788854-10789024 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 149, 19

Conread position: 1-193
Cow position: chr20:31077589-31077385 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 26, 0

Conread position: 1-195
Cow position: chr20:24392015-24391814 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 19, 97

Conread position: 1-196
Cow position: chr20:3255073-3254881 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 132, 15

Conread position: 1-197
Cow position: chr20:9379442-9379241 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 68, 0

Conread position: 1-197
Cow position: chr20:12420582-12420789 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 172
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 19, 96

Conread position: 1-197
Cow position: chr20:14759629-14759832 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 68, 20

Conread position: 1-197
Cow position: chr20:14806923-14806718 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 1-197
Cow position: chr20:15548860-15549065 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 169
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 15, 94

Conread position: 1-197
Cow position: chr20:22235343-22235147 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 161
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 32, 67

Conread position: 1-197
Cow position: chr20:33532339-33532143 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 9, 22

Conread position: 1-197
Cow position: chr20:36207844-36207634 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 166
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 17, 112

Conread position: 1-197
Cow position: chr20:38768424-38768621 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 31

Conread position: 1-197
Cow position: chr20:39518043-39517843 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 164

Conread position: 1-210
Cow position: chr20:32084043-32084270 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 175
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 16, 0

Conread position: 1-211
Cow position: chr20:7442096-7442306 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 170
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 68, 20

Conread position: 1-218
Cow position: chr20:7211076-7210846 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 181
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 13, 219

Conread position: 1-234
Cow position: chr20:14735705-14735469 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 180
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 68, 27

Conread position: 1-234
Cow position: chr20:40177281-40177044 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 16, 44

Conread position: 2-196
Cow position: chr20:33177221-33177015 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 160
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 33, 19

Conread position: 2-204
Cow position: chr20:22445611-22445810 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 19

Conread position: 3-197
Cow position: chr20:39398515-39398320 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 157
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 30, 18

Conread position: 3-211
Cow position: chr20:15565793-15566013 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 22, 79

Conread position: 4-179
Cow position: chr20:36010825-36010639 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 64, 0

Conread position: 5-197
Cow position: chr20:28067397-28067594 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 157
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 30, 51

Conread position: 5-211
Cow position: chr20:19328428-19328217 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 64, 16

Conread position: 7-197
Cow position: chr20:10208833-10208634 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 10-140
Cow position: chr20:39266933-39267069 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 10-183
Cow position: chr20:21761798-21761622 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 60

Conread position: 10-188
Cow position: chr20:18837132-18837320 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 10-191
Cow position: chr20:282902-283091 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 15, 59

Conread position: 10-196
Cow position: chr20:10178075-10178277 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 59, 0

Conread position: 10-196
Cow position: chr20:20203241-20203049 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 157
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 18, 0

Conread position: 10-197
Cow position: chr20:4205993-4205795 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 10-197
Cow position: chr20:5998648-5998832 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 12, 77

Conread position: 10-197
Cow position: chr20:12581931-12582115 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 11, 65

Conread position: 10-197
Cow position: chr20:19459642-19459815 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 11, 63

Conread position: 10-197
Cow position: chr20:22313137-22313325 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 13, 37

Conread position: 10-199
Cow position: chr20:7438828-7439019 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 11, 113

Conread position: 10-210
Cow position: chr20:18320766-18320977 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 164
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 9, 0

Conread position: 11-126
Cow position: chr20:22265224-22265341 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 19

Conread position: 11-182
Cow position: chr20:1576117-1575946 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 22, 60

Conread position: 11-196
Cow position: chr20:38818029-38817843 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 26, 133

Conread position: 11-197
Cow position: chr20:6258039-6258232 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 9, 0

Conread position: 11-197
Cow position: chr20:18618659-18618470 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 151
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 9, 77

Conread position: 12-132
Cow position: chr20:28894958-28894838 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 57, 118

Conread position: 12-197
Cow position: chr20:24069826-24069642 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 151
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 21, 130

Conread position: 12-204
Cow position: chr20:8578269-8578069 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 158
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 57, 0

Conread position: 15-191
Cow position: chr20:28982718-28982535 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 15-197
Cow position: chr20:3331270-3331462 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 54, 11

Conread position: 15-197
Cow position: chr20:3781408-3781594 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 54, 0

Conread position: 15-197
Cow position: chr20:8702899-8703075 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 56, 67

Conread position: 15-197
Cow position: chr20:11542264-11542451 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 144
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 11, 0

Conread position: 15-197
Cow position: chr20:33363534-33363352 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 12, 110

Conread position: 15-197
Cow position: chr20:39743325-39743146 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 43

Conread position: 16-197
Cow position: chr20:3606944-3607122 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 6, 54

Conread position: 16-197
Cow position: chr20:12995990-12996176 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 157
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 10, 91

Conread position: 16-197
Cow position: chr20:23505844-23505660 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 150
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 55, 101

Conread position: 17-178
Cow position: chr20:8308035-8307864 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 17-197
Cow position: chr20:2204654-2204833 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 52, 40

Conread position: 17-197
Cow position: chr20:25686332-25686520 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 17-197
Cow position: chr20:40511742-40511926 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 151
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 52, 88

Conread position: 19-211
Cow position: chr20:38578747-38578939 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 10, 35

Conread position: 21-197
Cow position: chr20:11550378-11550198 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 145
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 47, 0

Conread position: 21-197
Cow position: chr20:15593308-15593128 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 5, 67

Conread position: 22-195
Cow position: chr20:35970957-35970776 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 22-197
Cow position: chr20:3569055-3569228 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 80, 46

Conread position: 22-234
Cow position: chr20:13752245-13752033 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 119, 39

Conread position: 23-148
Cow position: chr20:35407873-35407744 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 24-155
Cow position: chr20:25162119-25162254 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 31-195
Cow position: chr20:5826943-5826771 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 141
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 38, 0

Conread position: 31-197
Cow position: chr20:5104438-5104603 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 102

Conread position: 31-239
Cow position: chr20:21019567-21019352 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 135

Conread position: 33-234
Cow position: chr20:31746628-31746831 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 36, 90

Conread position: 36-195
Cow position: chr20:1640458-1640613 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 105, 30

Conread position: 42-197
Cow position: chr20:35365036-35364883 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 15, 111

Conread position: 44-197
Cow position: chr20:11043513-11043664 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 106

Conread position: 45-163
Cow position: chr20:2298788-2298911 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 106
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 67-197
Cow position: chr20:18423683-18423553 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 74, 11

Conread position: 68-196
Cow position: chr20:32847318-32847186 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 112
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 73, 0

Conread position: 84-190
Cow position: chr20:34835921-34836032 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 92-197
Cow position: chr20:4892963-4893065 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 93
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 93-197
Cow position: chr20:39212741-39212637 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 90
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 62, 45

Show alignments to all cow chromosomes.