Cow genome map

Conread name: rret16_g12.y1

Conread position: 1-132
Cow position: chr23:12363622-12363761 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 114
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 1-138
Cow position: chr23:7361102-7360968 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 68, 20

Conread position: 1-166
Cow position: chr23:34611486-34611644 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 1-176
Cow position: chr23:2487997-2488173 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 68, 30

Conread position: 1-189
Cow position: chr23:9594837-9595031 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 158
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 19, 97

Conread position: 1-193
Cow position: chr23:24509690-24509496 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 161
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 68, 22

Conread position: 1-195
Cow position: chr23:16664574-16664757 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 74

Conread position: 1-196
Cow position: chr23:3967568-3967758 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 140, 27

Conread position: 1-196
Cow position: chr23:29034314-29034105 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 165
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 11, 0

Conread position: 1-197
Cow position: chr23:353594-353787 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 41, 15

Conread position: 1-197
Cow position: chr23:406176-406370 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 18, 72

Conread position: 1-197
Cow position: chr23:1068320-1068522 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 160
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 26, 38

Conread position: 1-197
Cow position: chr23:11045483-11045275 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 166
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 17, 174

Conread position: 1-197
Cow position: chr23:15056645-15056851 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 165
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 18, 0

Conread position: 1-197
Cow position: chr23:16881167-16881366 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 161
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 19, 135

Conread position: 1-197
Cow position: chr23:24867305-24867093 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 166
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 0

Conread position: 1-197
Cow position: chr23:29459103-29459298 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 158
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 68, 19

Conread position: 1-200
Cow position: chr23:2282183-2282389 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 167
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 68, 194

Conread position: 1-201
Cow position: chr23:15710083-15710291 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 68, 30

Conread position: 1-210
Cow position: chr23:1803782-1803567 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 34, 22

Conread position: 1-239
Cow position: chr23:39302694-39302461 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 66

Conread position: 2-196
Cow position: chr23:14191543-14191341 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 154
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 67, 0

Conread position: 3-197
Cow position: chr23:9268577-9268380 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 66, 17

Conread position: 3-197
Cow position: chr23:11473518-11473716 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 165
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 15, 7

Conread position: 5-186
Cow position: chr23:30999564-30999377 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 148
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 69, 22

Conread position: 5-195
Cow position: chr23:1605663-1605472 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 66, 7

Conread position: 5-196
Cow position: chr23:534212-534021 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 161
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 63, 18

Conread position: 5-197
Cow position: chr23:13511722-13511524 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 30, 11

Conread position: 6-195
Cow position: chr23:4980559-4980751 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 153
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 63, 144

Conread position: 7-185
Cow position: chr23:13520438-13520256 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 13, 126

Conread position: 7-197
Cow position: chr23:7845278-7845080 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 161
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 19, 25

Conread position: 7-197
Cow position: chr23:29626401-29626205 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 20, 153

Conread position: 7-197
Cow position: chr23:31493849-31493669 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 60, 0

Conread position: 10-195
Cow position: chr23:21764903-21764710 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 8, 0

Conread position: 10-197
Cow position: chr23:21452747-21452942 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 155
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 16, 0

Conread position: 10-197
Cow position: chr23:27544810-27544623 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 151
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 59, 11

Conread position: 10-197
Cow position: chr23:39775708-39775521 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 149
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 25, 57

Conread position: 11-176
Cow position: chr23:3394514-3394685 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 11-193
Cow position: chr23:33717557-33717749 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 149
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 18, 0

Conread position: 11-196
Cow position: chr23:2259614-2259808 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 57, 0

Conread position: 11-196
Cow position: chr23:19758647-19758831 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 129
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 118, 39

Conread position: 11-197
Cow position: chr23:1883375-1883184 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 159
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 12, 50

Conread position: 11-199
Cow position: chr23:1776652-1776842 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 152
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 130, 57

Conread position: 12-184
Cow position: chr23:5426407-5426231 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 144
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 57, 9

Conread position: 12-196
Cow position: chr23:41285899-41285719 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 151
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 12, 59

Conread position: 12-197
Cow position: chr23:4504805-4504618 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 129, 57

Conread position: 12-197
Cow position: chr23:8959576-8959387 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 90, 56

Conread position: 15-196
Cow position: chr23:20752993-20752804 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 15-233
Cow position: chr23:1640789-1640566 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 64, 31

Conread position: 16-132
Cow position: chr23:3433935-3434053 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 29

Conread position: 16-234
Cow position: chr23:36309398-36309178 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 19, 126

Conread position: 17-197
Cow position: chr23:4579064-4579244 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 148
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 11, 27

Conread position: 17-197
Cow position: chr23:39806842-39806663 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 148
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 52, 78

Conread position: 17-255
Cow position: chr23:6244613-6244855 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 9, 55

Conread position: 18-197
Cow position: chr23:1906022-1905819 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 20-211
Cow position: chr23:17404811-17404627 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 49, 134

Conread position: 21-210
Cow position: chr23:20056894-20057090 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 158
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 15, 0

Conread position: 22-132
Cow position: chr23:24809695-24809807 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 46, 106

Conread position: 23-172
Cow position: chr23:3282154-3282299 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 118, 41

Conread position: 23-197
Cow position: chr23:9599459-9599293 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 139
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 118, 43

Conread position: 23-204
Cow position: chr23:3918128-3918314 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 44, 0

Conread position: 24-133
Cow position: chr23:21502671-21502781 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 24-197
Cow position: chr23:39793419-39793245 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 45, 114

Conread position: 24-201
Cow position: chr23:1290262-1290081 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 45, 164

Conread position: 27-197
Cow position: chr23:1490016-1489847 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 42, 132

Conread position: 31-196
Cow position: chr23:1877912-1878079 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 143
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 40, 0

Conread position: 31-198
Cow position: chr23:4801983-4801823 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 108, 35

Conread position: 32-157
Cow position: chr23:1767790-1767661 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 37, 87

Conread position: 32-195
Cow position: chr23:38455221-38455392 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 37, 152

Conread position: 32-197
Cow position: chr23:360955-361119 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 37, 97

Conread position: 32-197
Cow position: chr23:1742317-1742148 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 37, 133

Conread position: 34-197
Cow position: chr23:1429842-1430003 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 135
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 107, 35

Conread position: 44-197
Cow position: chr23:222017-221861 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 25, 77

Conread position: 44-197
Cow position: chr23:1546158-1546007 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 51, 11

Conread position: 44-197
Cow position: chr23:26632751-26632590 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 137
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 25, 0

Conread position: 44-239
Cow position: chr23:33232961-33233159 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 100

Conread position: 49-197
Cow position: chr23:22399347-22399192 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 129
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 14, 0

Conread position: 50-148
Cow position: chr23:22350603-22350501 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 50-197
Cow position: chr23:11315087-11315226 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 53-197
Cow position: chr23:6767830-6767681 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 54-191
Cow position: chr23:8063486-8063350 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 87, 20

Conread position: 57-244
Cow position: chr23:8698377-8698185 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 84, 27

Conread position: 77-197
Cow position: chr23:1610767-1610643 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 105
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 61, 118

Conread position: 79-197
Cow position: chr23:8917941-8918062 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 61, 45

Conread position: 82-234
Cow position: chr23:9235164-9235312 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 124, 52

Show alignments to all cow chromosomes.