Cow genome map

Conread name: rret16_g12.y1

Conread position: 1-138
Cow position: chr25:16570595-16570461 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 68, 29

Conread position: 1-150
Cow position: chr25:26679217-26679062 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 19, 0

Conread position: 1-157
Cow position: chr25:33267717-33267550 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 19, 95

Conread position: 1-169
Cow position: chr25:4681223-4681048 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 15, 73

Conread position: 1-171
Cow position: chr25:23323191-23323015 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 68, 25

Conread position: 1-177
Cow position: chr25:14720735-14720559 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 19, 67

Conread position: 1-186
Cow position: chr25:11661827-11662022 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 25, 0

Conread position: 1-188
Cow position: chr25:20133323-20133520 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 157
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 16, 0

Conread position: 1-192
Cow position: chr25:4521846-4522027 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 25, 143

Conread position: 1-192
Cow position: chr25:14833673-14833864 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 32, 15

Conread position: 1-193
Cow position: chr25:6683071-6683270 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 19, 126

Conread position: 1-195
Cow position: chr25:15694973-15694773 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 165
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 18, 56

Conread position: 1-195
Cow position: chr25:32191652-32191458 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 157
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 68, 20

Conread position: 1-196
Cow position: chr25:16001534-16001732 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 164
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 19, 140

Conread position: 1-197
Cow position: chr25:5846818-5847020 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 100

Conread position: 1-197
Cow position: chr25:9990119-9990303 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 157
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 140, 19

Conread position: 1-197
Cow position: chr25:11978716-11978912 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 70, 20

Conread position: 1-197
Cow position: chr25:15273664-15273476 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 21, 60

Conread position: 1-197
Cow position: chr25:15714864-15714668 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 159
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 19, 49

Conread position: 1-197
Cow position: chr25:20069712-20069507 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 28, 46

Conread position: 1-197
Cow position: chr25:26701021-26700825 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 19, 68

Conread position: 1-197
Cow position: chr25:27531288-27531480 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 25, 30

Conread position: 1-197
Cow position: chr25:33550500-33550292 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 166
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 18, 97

Conread position: 1-197
Cow position: chr25:38982089-38981897 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 68, 20

Conread position: 1-227
Cow position: chr25:12778547-12778776 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 140, 68

Conread position: 2-197
Cow position: chr25:13569182-13569380 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 27, 132

Conread position: 2-244
Cow position: chr25:10156562-10156327 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 183
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 17, 72

Conread position: 3-118
Cow position: chr25:7449789-7449675 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 25

Conread position: 3-196
Cow position: chr25:11436818-11437014 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 159
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 17, 86

Conread position: 3-214
Cow position: chr25:35347893-35347673 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 66, 0

Conread position: 3-245
Cow position: chr25:24669449-24669695 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 187
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 24, 124

Conread position: 4-139
Cow position: chr25:31732348-31732488 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 15, 127

Conread position: 4-186
Cow position: chr25:38850505-38850695 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 142
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 65, 17

Conread position: 4-197
Cow position: chr25:7801129-7800923 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 16, 79

Conread position: 4-197
Cow position: chr25:19679327-19679129 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 161
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 65, 8

Conread position: 4-197
Cow position: chr25:31732746-31732949 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 159
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 15, 127

Conread position: 5-153
Cow position: chr25:34978885-34979034 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 125

Conread position: 6-186
Cow position: chr25:7750433-7750248 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 147
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 19, 64

Conread position: 9-211
Cow position: chr25:35333138-35332937 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 60, 130

Conread position: 10-144
Cow position: chr25:11054882-11054746 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 10-163
Cow position: chr25:12081342-12081496 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 59, 129

Conread position: 10-176
Cow position: chr25:26134020-26133846 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 10-190
Cow position: chr25:13272547-13272363 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 20, 75

Conread position: 10-197
Cow position: chr25:12817353-12817159 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 59, 11

Conread position: 10-197
Cow position: chr25:30279230-30279420 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 11, 59

Conread position: 10-197
Cow position: chr25:36033418-36033223 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 154
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 11, 0

Conread position: 10-210
Cow position: chr25:9957059-9957259 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 23, 132

Conread position: 10-212
Cow position: chr25:788242-788040 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 25, 146

Conread position: 10-223
Cow position: chr25:18721142-18721345 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 11, 48

Conread position: 10-234
Cow position: chr25:24452197-24452421 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 177
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 19, 61

Conread position: 11-197
Cow position: chr25:34169924-34169741 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 152
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 9, 54

Conread position: 11-197
Cow position: chr25:40388487-40388670 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 120, 57

Conread position: 11-201
Cow position: chr25:36746471-36746663 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 130, 57

Conread position: 11-211
Cow position: chr25:10330435-10330630 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 8, 21

Conread position: 12-157
Cow position: chr25:16555741-16555589 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 12-193
Cow position: chr25:23829153-23829327 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 75

Conread position: 12-197
Cow position: chr25:7216807-7216615 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 153
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 17, 0

Conread position: 12-197
Cow position: chr25:7641474-7641667 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 9, 60

Conread position: 12-197
Cow position: chr25:15319895-15319707 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 57, 47

Conread position: 12-198
Cow position: chr25:15286565-15286754 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 90, 72

Conread position: 12-233
Cow position: chr25:22297042-22297266 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 25, 14

Conread position: 13-194
Cow position: chr25:6885997-6886187 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 15-141
Cow position: chr25:8961743-8961618 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 8, 52

Conread position: 15-156
Cow position: chr25:5920916-5920766 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 15-197
Cow position: chr25:7306275-7306085 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 54, 0

Conread position: 15-197
Cow position: chr25:25051406-25051597 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 153
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 11, 120

Conread position: 15-198
Cow position: chr25:27594271-27594090 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 149, 30

Conread position: 16-193
Cow position: chr25:30035519-30035339 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 16-197
Cow position: chr25:8347481-8347296 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 147
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 53, 120

Conread position: 16-197
Cow position: chr25:12899729-12899542 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 152
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 53, 101

Conread position: 16-197
Cow position: chr25:24573039-24572861 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 144
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 53, 39

Conread position: 17-133
Cow position: chr25:21668217-21668098 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 17-193
Cow position: chr25:28187972-28188158 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 146
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 12, 0

Conread position: 17-195
Cow position: chr25:35076718-35076887 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 66, 40

Conread position: 17-196
Cow position: chr25:20785616-20785796 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 156
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 10

Conread position: 17-197
Cow position: chr25:16319174-16319345 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 117, 8

Conread position: 20-196
Cow position: chr25:12319379-12319550 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 49, 117

Conread position: 22-197
Cow position: chr25:21191453-21191274 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 119, 61

Conread position: 22-197
Cow position: chr25:40957021-40957200 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 47, 161

Conread position: 31-150
Cow position: chr25:30064931-30065046 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 110, 34

Conread position: 31-197
Cow position: chr25:2136311-2136138 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 140
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 38, 0

Conread position: 31-197
Cow position: chr25:3992740-3992577 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 110, 37

Conread position: 32-190
Cow position: chr25:36017492-36017334 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 37, 9

Conread position: 32-197
Cow position: chr25:8560820-8560656 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 94

Conread position: 33-148
Cow position: chr25:41151006-41151124 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 37-197
Cow position: chr25:12234810-12234971 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 104, 0

Conread position: 42-197
Cow position: chr25:12195381-12195538 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 27, 120

Conread position: 42-197
Cow position: chr25:21209006-21209161 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 133
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 99, 15

Conread position: 43-197
Cow position: chr25:10746843-10746687 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 43, 0

Conread position: 45-165
Cow position: chr25:26523907-26523783 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 22, 9

Conread position: 46-197
Cow position: chr25:26238813-26238658 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 133
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 23, 0

Conread position: 48-197
Cow position: chr25:6003051-6003204 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 37

Conread position: 68-187
Cow position: chr25:21266927-21266807 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 73, 0

Conread position: 69-197
Cow position: chr25:12117072-12117202 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 70-211
Cow position: chr25:10010803-10010950 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 87-195
Cow position: chr25:33556865-33556756 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 93-197
Cow position: chr25:9842896-9842788 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 98
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 95

Show alignments to all cow chromosomes.