Cow genome map
| Conread name: | rret16_g12.y1 |
| Conread position: | 1-125 |
| Cow position: | chr27:23510950-23511084 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-132 |
| Cow position: | chr27:20481402-20481276 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 68, 19 |
| Conread position: | 1-144 |
| Cow position: | chr27:16625860-16626010 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 124 |
| Conread position: | 1-157 |
| Cow position: | chr27:22569746-22569897 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-169 |
| Cow position: | chr27:20789416-20789240 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 1-172 |
| Cow position: | chr27:16589739-16589570 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 1-175 |
| Cow position: | chr27:1122994-1123180 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-181 |
| Cow position: | chr27:426932-427124 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 19, 48 |
| Conread position: | 1-186 |
| Cow position: | chr27:27460609-27460415 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 33, 22 |
| Conread position: | 1-190 |
| Cow position: | chr27:3306736-3306936 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 118 |
| Conread position: | 1-191 |
| Cow position: | chr27:29431427-29431622 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 1-193 |
| Cow position: | chr27:4944551-4944365 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 1-194 |
| Cow position: | chr27:22454812-22454617 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 34, 139 |
| Conread position: | 1-195 |
| Cow position: | chr27:7412356-7412548 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 140, 15 |
| Conread position: | 1-195 |
| Cow position: | chr27:27632638-27632444 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 139, 20 |
| Conread position: | 1-196 |
| Cow position: | chr27:14670419-14670214 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 1-197 |
| Cow position: | chr27:19387981-19388186 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 1-197 |
| Cow position: | chr27:20641372-20641179 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 24, 71 |
| Conread position: | 1-197 |
| Cow position: | chr27:21569877-21569676 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 25, 121 |
| Conread position: | 1-197 |
| Cow position: | chr27:22035414-22035206 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-197 |
| Cow position: | chr27:26424624-26424418 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 15, 120 |
| Conread position: | 1-197 |
| Cow position: | chr27:30407074-30406864 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-210 |
| Cow position: | chr27:8353439-8353658 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-214 |
| Cow position: | chr27:20068014-20067793 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 1-234 |
| Cow position: | chr27:29493934-29493710 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 205, 27 |
| Conread position: | 2-191 |
| Cow position: | chr27:20758081-20757893 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 60 |
| Conread position: | 2-195 |
| Cow position: | chr27:16513911-16513716 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 2-197 |
| Cow position: | chr27:24014769-24014573 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 66, 48 |
| Conread position: | 3-139 |
| Cow position: | chr27:27694807-27694664 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 125 |
| Conread position: | 3-195 |
| Cow position: | chr27:12596736-12596924 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 66, 12 |
| Conread position: | 3-197 |
| Cow position: | chr27:17397489-17397279 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 3-197 |
| Cow position: | chr27:28164438-28164244 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 4-214 |
| Cow position: | chr27:31219222-31219424 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 42 |
| Conread position: | 5-197 |
| Cow position: | chr27:4672993-4673188 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 6-197 |
| Cow position: | chr27:30856412-30856224 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 6-197 |
| Cow position: | chr27:31231112-31230926 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 135, 22 |
| Conread position: | 7-196 |
| Cow position: | chr27:815337-815531 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 19, 156 |
| Conread position: | 7-196 |
| Cow position: | chr27:27136546-27136358 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 62, 152 |
| Conread position: | 7-197 |
| Cow position: | chr27:16284449-16284640 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 17, 56 |
| Conread position: | 10-133 |
| Cow position: | chr27:22386844-22386972 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 10-196 |
| Cow position: | chr27:27550765-27550581 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 10-197 |
| Cow position: | chr27:435209-435404 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 10-197 |
| Cow position: | chr27:1498291-1498481 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 10, 165 |
| Conread position: | 10-197 |
| Cow position: | chr27:18593245-18593438 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 10-197 |
| Cow position: | chr27:20591955-20592151 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 10-197 |
| Cow position: | chr27:22418794-22418597 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 11, 112 |
| Conread position: | 10-197 |
| Cow position: | chr27:23483200-23483390 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 13, 88 |
| Conread position: | 10-197 |
| Cow position: | chr27:28190238-28190050 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 10-217 |
| Cow position: | chr27:10992329-10992542 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 13, 67 |
| Conread position: | 10-224 |
| Cow position: | chr27:22268477-22268696 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 59, 197 |
| Conread position: | 11-195 |
| Cow position: | chr27:6454185-6454380 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 98 |
| Conread position: | 11-197 |
| Cow position: | chr27:22171278-22171466 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 60, 20 |
| Conread position: | 11-197 |
| Cow position: | chr27:30550972-30551163 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 12-195 |
| Cow position: | chr27:27844019-27843827 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 17, 85 |
| Conread position: | 15-197 |
| Cow position: | chr27:19685730-19685547 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 133 |
| Conread position: | 15-197 |
| Cow position: | chr27:23472237-23472423 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 152 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 126, 59 |
| Conread position: | 15-197 |
| Cow position: | chr27:27856314-27856501 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 16-162 |
| Cow position: | chr27:16103790-16103936 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 53, 89 |
| Conread position: | 16-197 |
| Cow position: | chr27:16871927-16871748 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 16-211 |
| Cow position: | chr27:7212730-7212532 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 16-211 |
| Cow position: | chr27:22220537-22220736 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 17-196 |
| Cow position: | chr27:20795779-20795950 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 124, 13 |
| Conread position: | 17-196 |
| Cow position: | chr27:24321170-24321356 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 6 |
| Conread position: | 20-172 |
| Cow position: | chr27:26643672-26643821 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 107, 47 |
| Conread position: | 21-197 |
| Cow position: | chr27:6541614-6541792 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 7, 135 |
| Conread position: | 22-148 |
| Cow position: | chr27:9697768-9697896 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 22-197 |
| Cow position: | chr27:4819714-4819543 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 25-169 |
| Cow position: | chr27:17331490-17331642 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 31-193 |
| Cow position: | chr27:22547411-22547241 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 31-194 |
| Cow position: | chr27:8629876-8629707 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 31-197 |
| Cow position: | chr27:4829804-4829640 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 40, 54 |
| Conread position: | 31-243 |
| Cow position: | chr27:4812883-4812660 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 32-197 |
| Cow position: | chr27:23455157-23454974 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 32-197 |
| Cow position: | chr27:24559447-24559280 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 15 |
| Conread position: | 32-197 |
| Cow position: | chr27:27389020-27388861 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 106, 51 |
| Conread position: | 32-197 |
| Cow position: | chr27:29019754-29019581 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 33-197 |
| Cow position: | chr27:22771750-22771925 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 34-193 |
| Cow position: | chr27:22498557-22498716 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 35, 109 |
| Conread position: | 34-197 |
| Cow position: | chr27:17472809-17472980 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 36-197 |
| Cow position: | chr27:19717926-19718091 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 42-196 |
| Cow position: | chr27:6073928-6074083 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 114 |
| Conread position: | 54-192 |
| Cow position: | chr27:26239047-26239187 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 55-197 |
| Cow position: | chr27:23558365-23558218 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 69-198 |
| Cow position: | chr27:26322388-26322522 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 74-197 |
| Cow position: | chr27:4719850-4719726 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 18 |
Show alignments to all cow chromosomes.