Cow genome map

Conread name: rret16_g12.y1

Conread position: 1-162
Cow position: chr28:4016529-4016368 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 139
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 19, 69

Conread position: 1-162
Cow position: chr28:10202472-10202313 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 70, 0

Conread position: 1-169
Cow position: chr28:2131926-2132100 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 73

Conread position: 1-178
Cow position: chr28:11828958-11829129 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 140, 20

Conread position: 1-186
Cow position: chr28:4881242-4881440 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 34, 22

Conread position: 1-190
Cow position: chr28:4158953-4158753 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 20, 74

Conread position: 1-191
Cow position: chr28:24017988-24017804 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 15, 26

Conread position: 1-195
Cow position: chr28:5658542-5658350 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 159
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 68, 20

Conread position: 1-195
Cow position: chr28:11426543-11426749 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 166
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 11, 0

Conread position: 1-196
Cow position: chr28:3492785-3492989 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 19, 164

Conread position: 1-197
Cow position: chr28:2960833-2961030 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 178

Conread position: 1-197
Cow position: chr28:4536454-4536265 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 19, 141

Conread position: 1-197
Cow position: chr28:5204193-5203994 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 160
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 19, 126

Conread position: 1-197
Cow position: chr28:5771362-5771164 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 44, 138

Conread position: 1-197
Cow position: chr28:9285372-9285583 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 1-197
Cow position: chr28:9636459-9636662 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 163
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 53, 30

Conread position: 1-197
Cow position: chr28:10172418-10172619 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 157
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 18, 35

Conread position: 1-197
Cow position: chr28:11884523-11884728 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 162
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 8, 173

Conread position: 1-197
Cow position: chr28:16370085-16370280 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 35, 20

Conread position: 1-214
Cow position: chr28:2737808-2738035 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 17, 0

Conread position: 1-239
Cow position: chr28:3023915-3024162 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 190
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 22, 78

Conread position: 1-241
Cow position: chr28:16204336-16204581 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 26

Conread position: 2-196
Cow position: chr28:25071117-25070912 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 94, 21

Conread position: 2-197
Cow position: chr28:3256795-3256588 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 165
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 17, 0

Conread position: 2-197
Cow position: chr28:5904730-5904530 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 18, 132

Conread position: 3-125
Cow position: chr28:8140478-8140350 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 13, 0

Conread position: 3-138
Cow position: chr28:30746734-30746873 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 17, 42

Conread position: 3-145
Cow position: chr28:7607980-7608133 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 3-157
Cow position: chr28:29989123-29989278 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 13

Conread position: 3-197
Cow position: chr28:2905571-2905375 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 162
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 73

Conread position: 4-197
Cow position: chr28:10533937-10534136 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 159
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 15, 97

Conread position: 4-197
Cow position: chr28:21868452-21868246 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 167
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 16, 0

Conread position: 6-197
Cow position: chr28:12619553-12619357 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 63, 27

Conread position: 6-234
Cow position: chr28:14151221-14150989 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 96, 16

Conread position: 7-197
Cow position: chr28:22332523-22332344 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 62, 51

Conread position: 8-234
Cow position: chr28:15063352-15063584 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 11, 60

Conread position: 10-172
Cow position: chr28:18186543-18186379 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 132

Conread position: 10-179
Cow position: chr28:118065-118243 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 25, 115

Conread position: 10-194
Cow position: chr28:30327103-30327284 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 10, 146

Conread position: 10-195
Cow position: chr28:7751315-7751504 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 158
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 15, 60

Conread position: 10-197
Cow position: chr28:21598267-21598459 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 24, 0

Conread position: 10-197
Cow position: chr28:22346006-22345814 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 154
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 16, 50

Conread position: 10-197
Cow position: chr28:33163475-33163673 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 156
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 11, 0

Conread position: 10-234
Cow position: chr28:17029732-17029960 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 23, 42

Conread position: 11-197
Cow position: chr28:4588084-4587891 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 156
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 10, 47

Conread position: 11-197
Cow position: chr28:5817824-5817641 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 58, 10

Conread position: 11-197
Cow position: chr28:8022125-8022316 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 154
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 58, 84

Conread position: 11-197
Cow position: chr28:13865829-13865640 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 10

Conread position: 11-197
Cow position: chr28:23621530-23621342 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 23, 0

Conread position: 11-197
Cow position: chr28:23776032-23775840 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 156
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 7, 78

Conread position: 11-197
Cow position: chr28:24646523-24646335 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 154
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 9, 48

Conread position: 12-181
Cow position: chr28:24966369-24966203 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 14, 57

Conread position: 12-196
Cow position: chr28:6971366-6971544 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 153
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 20, 58

Conread position: 12-197
Cow position: chr28:4188511-4188329 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 56, 19

Conread position: 12-202
Cow position: chr28:15043879-15044068 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 150
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 20, 37

Conread position: 12-234
Cow position: chr28:20963546-20963777 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 156
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 15-193
Cow position: chr28:11752161-11752346 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 10, 0

Conread position: 15-194
Cow position: chr28:30303213-30303398 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 54, 0

Conread position: 15-195
Cow position: chr28:5128749-5128933 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 152
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 11, 55

Conread position: 15-196
Cow position: chr28:5437107-5437296 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 143
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 54, 0

Conread position: 15-196
Cow position: chr28:13607867-13607682 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 19, 89

Conread position: 15-197
Cow position: chr28:21844936-21844750 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 154
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 126, 52

Conread position: 15-197
Cow position: chr28:26220236-26220056 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 143
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 54, 122

Conread position: 15-206
Cow position: chr28:8787520-8787332 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 54, 122

Conread position: 16-146
Cow position: chr28:24082241-24082116 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 81, 7

Conread position: 16-195
Cow position: chr28:11422836-11423008 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 53, 85

Conread position: 16-196
Cow position: chr28:33884380-33884205 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 116, 49

Conread position: 16-197
Cow position: chr28:22371704-22371884 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 13, 48

Conread position: 18-195
Cow position: chr28:7549082-7549266 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 147
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 94

Conread position: 20-197
Cow position: chr28:4884288-4884472 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 149
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 49, 0

Conread position: 21-197
Cow position: chr28:3751287-3751113 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 120, 36

Conread position: 21-197
Cow position: chr28:26614859-26614683 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 145
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 48, 129

Conread position: 22-195
Cow position: chr28:7980447-7980622 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 146
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 119, 47

Conread position: 22-197
Cow position: chr28:24367958-24368156 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 149
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 22-197
Cow position: chr28:26340316-26340131 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 147
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 47, 63

Conread position: 23-197
Cow position: chr28:9108419-9108236 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 146
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 46, 0

Conread position: 23-234
Cow position: chr28:13474273-13474061 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 46, 103

Conread position: 24-197
Cow position: chr28:14649320-14649143 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 45, 0

Conread position: 31-177
Cow position: chr28:3000633-3000780 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 123
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 114, 36

Conread position: 31-195
Cow position: chr28:3914676-3914506 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 142
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 38, 0

Conread position: 31-197
Cow position: chr28:11687064-11687238 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 141
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 0

Conread position: 31-197
Cow position: chr28:12964532-12964372 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 40, 85

Conread position: 31-197
Cow position: chr28:25596591-25596427 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 136
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 110, 37

Conread position: 32-196
Cow position: chr28:18591231-18591065 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 135
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 109, 34

Conread position: 33-193
Cow position: chr28:13902006-13902160 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 108, 41

Conread position: 33-193
Cow position: chr28:23231102-23231269 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 33-196
Cow position: chr28:13267749-13267577 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 142
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 36, 0

Conread position: 37-197
Cow position: chr28:5188445-5188607 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 32, 96

Conread position: 42-206
Cow position: chr28:8935889-8935718 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 27, 8

Conread position: 43-195
Cow position: chr28:2279713-2279868 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 28, 0

Conread position: 49-162
Cow position: chr28:17362642-17362757 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 92

Conread position: 49-197
Cow position: chr28:16686974-16686827 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 53-189
Cow position: chr28:6861897-6861756 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 57-195
Cow position: chr28:7268001-7268139 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 84, 14

Conread position: 60-197
Cow position: chr28:20759984-20760129 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 121
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 0

Conread position: 66-210
Cow position: chr28:5366200-5366349 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 123
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 12, 0

Conread position: 71-185
Cow position: chr28:16879350-16879465 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 101
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 69

Show alignments to all cow chromosomes.