Cow genome map

Conread name: rret16_g12.y1

Conread position: 1-125
Cow position: chr29:27329884-27329753 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 1-149
Cow position: chr29:1124646-1124491 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 1-157
Cow position: chr29:24252230-24252066 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 1-176
Cow position: chr29:32211075-32211251 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 150
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 68, 20

Conread position: 1-193
Cow position: chr29:25737423-25737624 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 19, 147

Conread position: 1-195
Cow position: chr29:28166227-28166428 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 9, 32

Conread position: 1-196
Cow position: chr29:10456571-10456764 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 159
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 19, 31

Conread position: 1-196
Cow position: chr29:26735020-26734822 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 17, 97

Conread position: 1-197
Cow position: chr29:9709685-9709486 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 158
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 25, 96

Conread position: 1-197
Cow position: chr29:10156310-10156502 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 17, 139

Conread position: 1-197
Cow position: chr29:17109951-17109759 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 155
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 68, 33

Conread position: 1-197
Cow position: chr29:19792285-19792493 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 34, 21

Conread position: 1-197
Cow position: chr29:21000624-21000429 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 161
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 68, 20

Conread position: 1-197
Cow position: chr29:22714731-22714940 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 165
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 19, 0

Conread position: 1-197
Cow position: chr29:22778184-22778394 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 167
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 19, 0

Conread position: 1-197
Cow position: chr29:29769360-29769558 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 156
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 28, 166

Conread position: 1-197
Cow position: chr29:34773746-34773940 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 68, 151

Conread position: 1-197
Cow position: chr29:36217106-36216905 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 160
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 25, 0

Conread position: 1-197
Cow position: chr29:41811596-41811790 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 24, 77

Conread position: 1-223
Cow position: chr29:29975029-29974801 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 177
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 66, 14

Conread position: 1-232
Cow position: chr29:35501663-35501898 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 186
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 19, 39

Conread position: 1-243
Cow position: chr29:12680147-12679894 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 192
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 19, 32

Conread position: 1-249
Cow position: chr29:26330197-26329951 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 18, 154

Conread position: 2-156
Cow position: chr29:23243887-23244051 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 133
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 18, 0

Conread position: 2-185
Cow position: chr29:7040858-7041039 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 149
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 139, 24

Conread position: 2-197
Cow position: chr29:868765-868560 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 0

Conread position: 2-197
Cow position: chr29:19762261-19762060 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 17, 68

Conread position: 4-197
Cow position: chr29:2533047-2532849 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 161
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 23, 68

Conread position: 4-197
Cow position: chr29:10838934-10838738 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 156
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 14, 27

Conread position: 5-197
Cow position: chr29:36586562-36586366 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 19, 10

Conread position: 6-144
Cow position: chr29:31674614-31674471 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 7-185
Cow position: chr29:22613411-22613227 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 145
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 13, 161

Conread position: 7-196
Cow position: chr29:1556912-1556721 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 62, 16

Conread position: 7-197
Cow position: chr29:4480190-4480388 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 157
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 62, 0

Conread position: 7-197
Cow position: chr29:43328625-43328426 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 15, 0

Conread position: 8-197
Cow position: chr29:34736487-34736678 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 65, 134

Conread position: 10-182
Cow position: chr29:27588902-27588722 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 11, 0

Conread position: 10-196
Cow position: chr29:87033-87233 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 161
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 12, 0

Conread position: 10-196
Cow position: chr29:17607396-17607205 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 150
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 14, 64

Conread position: 10-197
Cow position: chr29:2623501-2623692 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 14, 61

Conread position: 10-197
Cow position: chr29:22936250-22936067 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 25, 93

Conread position: 10-197
Cow position: chr29:26615742-26615937 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 157
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 23, 0

Conread position: 10-197
Cow position: chr29:32799727-32799915 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 139

Conread position: 10-197
Cow position: chr29:41530828-41530637 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 23, 95

Conread position: 10-198
Cow position: chr29:4328396-4328220 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 151
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 23, 48

Conread position: 10-198
Cow position: chr29:40763702-40763898 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 11, 33

Conread position: 11-175
Cow position: chr29:5186516-5186689 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 10, 87

Conread position: 11-195
Cow position: chr29:4194141-4194331 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 58, 14

Conread position: 11-197
Cow position: chr29:12451351-12451159 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 15

Conread position: 11-197
Cow position: chr29:18735663-18735855 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 91, 57

Conread position: 11-197
Cow position: chr29:28197027-28197220 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 7, 95

Conread position: 11-202
Cow position: chr29:31489300-31489102 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 18, 0

Conread position: 12-165
Cow position: chr29:10235155-10235310 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 23, 82

Conread position: 12-211
Cow position: chr29:709147-709350 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 81, 15

Conread position: 13-193
Cow position: chr29:19601377-19601549 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 7, 22

Conread position: 15-139
Cow position: chr29:29314681-29314808 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 15-197
Cow position: chr29:44232976-44233161 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 54, 0

Conread position: 16-176
Cow position: chr29:19125317-19125152 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 16-197
Cow position: chr29:8190497-8190674 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 107, 52

Conread position: 16-234
Cow position: chr29:34745688-34745906 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 55, 123

Conread position: 17-197
Cow position: chr29:24103573-24103761 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 157
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 16, 29

Conread position: 19-197
Cow position: chr29:4066057-4065875 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 148
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 8, 146

Conread position: 21-197
Cow position: chr29:22162285-22162463 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 151
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 120

Conread position: 21-211
Cow position: chr29:40166208-40166015 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 155
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 105, 45

Conread position: 22-184
Cow position: chr29:3100290-3100461 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 141
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 47, 0

Conread position: 24-197
Cow position: chr29:44682134-44682303 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 45, 137

Conread position: 31-245
Cow position: chr29:45005673-45005875 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 110, 35

Conread position: 32-197
Cow position: chr29:28868592-28868420 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 37, 21

Conread position: 33-197
Cow position: chr29:7407932-7408101 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 108, 0

Conread position: 41-197
Cow position: chr29:19949249-19949097 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 130
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 99, 27

Conread position: 49-181
Cow position: chr29:26986872-26986742 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 94

Conread position: 52-197
Cow position: chr29:5098823-5098974 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 52-197
Cow position: chr29:28446319-28446472 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 126
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 17, 0

Conread position: 55-212
Cow position: chr29:40902788-40902947 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 130
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 16, 0

Conread position: 68-195
Cow position: chr29:686268-686402 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 80-197
Cow position: chr29:23155160-23155038 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 102
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 87-197
Cow position: chr29:18085492-18085378 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 87-197
Cow position: chr29:21665869-21665758 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 94
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 88-197
Cow position: chr29:36356746-36356639 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 53, 34

Conread position: 89-181
Cow position: chr29:34430382-34430289 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 82
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 0

Show alignments to all cow chromosomes.