Cow genome map

Conread name: rret28_b20.y1

Conread position: 1-562
Cow position: chr1:72082226-72082804 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 109

Conread position: 1-574
Cow position: chr1:82922696-82922102 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 111

Conread position: 1-575
Cow position: chr1:38420124-38420701 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 387
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 15, 99

Conread position: 1-577
Cow position: chr1:38399456-38400041 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 99

Conread position: 26-577
Cow position: chr1:30063880-30064454 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 18

Conread position: 29-393
Cow position: chr1:7408883-7408520 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 247
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 24, 66

Conread position: 49-562
Cow position: chr1:99315738-99316248 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 347
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 123, 51

Conread position: 49-574
Cow position: chr1:87969840-87970372 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 364
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 152, 52

Conread position: 49-577
Cow position: chr1:16215964-16215431 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 368
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 30, 14

Conread position: 50-546
Cow position: chr1:20830423-20830923 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 19

Conread position: 50-562
Cow position: chr1:25053822-25054327 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 37

Conread position: 50-562
Cow position: chr1:56142818-56142309 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 52

Conread position: 50-574
Cow position: chr1:12060678-12060147 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 34

Conread position: 50-574
Cow position: chr1:39545315-39545836 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 7

Conread position: 50-574
Cow position: chr1:49972645-49972108 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 23

Conread position: 50-574
Cow position: chr1:55778116-55778642 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 33

Conread position: 50-574
Cow position: chr1:89769010-89768478 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 16

Conread position: 50-575
Cow position: chr1:74304832-74304300 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 69

Conread position: 52-545
Cow position: chr1:82367302-82367793 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 47

Conread position: 54-545
Cow position: chr1:30858003-30857520 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 311
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 64, 20

Conread position: 56-248
Cow position: chr1:73197500-73197312 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 159, 38

Conread position: 56-476
Cow position: chr1:91891587-91891152 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 47

Conread position: 56-530
Cow position: chr1:57745869-57745387 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 331
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 40, 297

Conread position: 56-560
Cow position: chr1:29363827-29364345 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 44

Conread position: 56-562
Cow position: chr1:30533492-30532971 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 47

Conread position: 56-562
Cow position: chr1:33852801-33853324 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 44

Conread position: 56-562
Cow position: chr1:33897792-33898307 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 44

Conread position: 56-572
Cow position: chr1:9260017-9260546 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 44

Conread position: 56-574
Cow position: chr1:18964837-18964306 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 44

Conread position: 56-574
Cow position: chr1:22619139-22618614 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 44

Conread position: 56-574
Cow position: chr1:28874599-28875131 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 46

Conread position: 56-574
Cow position: chr1:52357727-52357195 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 46

Conread position: 56-574
Cow position: chr1:71561213-71560685 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 44

Conread position: 56-574
Cow position: chr1:74285147-74284619 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 46

Conread position: 56-574
Cow position: chr1:86546605-86546079 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 44

Conread position: 56-576
Cow position: chr1:46837159-46837674 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 44

Conread position: 57-562
Cow position: chr1:16581026-16580515 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 346
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 125, 43

Conread position: 57-562
Cow position: chr1:16586602-16586090 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 346
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 125, 43

Conread position: 57-574
Cow position: chr1:17035061-17034531 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 43

Conread position: 57-574
Cow position: chr1:22906279-22906803 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 86

Conread position: 57-577
Cow position: chr1:13581455-13580933 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 43

Conread position: 57-577
Cow position: chr1:18139073-18138545 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 354
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 9, 44

Conread position: 57-577
Cow position: chr1:59648869-59649364 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 93

Conread position: 58-577
Cow position: chr1:51965807-51966341 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 120

Conread position: 76-559
Cow position: chr1:40502311-40501844 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 64

Conread position: 82-574
Cow position: chr1:33713629-33714145 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 18

Conread position: 84-545
Cow position: chr1:40966857-40966381 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 18

Conread position: 84-562
Cow position: chr1:62804615-62804131 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 18

Conread position: 84-574
Cow position: chr1:56192604-56192096 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 18

Conread position: 89-248
Cow position: chr1:57972036-57971873 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 23, 89

Conread position: 97-577
Cow position: chr1:22844054-22844539 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 63

Conread position: 104-574
Cow position: chr1:82911250-82910767 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 269

Conread position: 104-577
Cow position: chr1:21354835-21354352 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 22

Conread position: 120-513
Cow position: chr1:72037955-72037558 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 60

Conread position: 124-577
Cow position: chr1:27542731-27543201 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 314
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 56, 250

Conread position: 127-556
Cow position: chr1:101012582-101012144 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 55

Conread position: 180-560
Cow position: chr1:96447393-96447756 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 224
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 212, 73

Conread position: 235-562
Cow position: chr1:38477035-38477354 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 118

Conread position: 235-563
Cow position: chr1:26307723-26307407 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 210
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 126, 17

Conread position: 238-562
Cow position: chr1:29039975-29040291 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 49

Conread position: 238-562
Cow position: chr1:102433303-102432983 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 29

Conread position: 238-574
Cow position: chr1:90607135-90606802 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 115

Conread position: 238-577
Cow position: chr1:31496672-31497006 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 24

Conread position: 238-577
Cow position: chr1:41519068-41518736 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 115

Conread position: 244-574
Cow position: chr1:100594490-100594165 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 110

Conread position: 244-577
Cow position: chr1:14621291-14621615 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 223
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 46

Conread position: 246-561
Cow position: chr1:31608111-31608419 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 211
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 65, 7

Conread position: 246-562
Cow position: chr1:1103877-1103578 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 208
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 131, 7

Conread position: 246-575
Cow position: chr1:57971855-57971530 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 113

Conread position: 247-574
Cow position: chr1:30282101-30281778 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 105

Conread position: 247-574
Cow position: chr1:30716364-30716687 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 105

Conread position: 247-574
Cow position: chr1:86594567-86594246 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 64

Conread position: 249-577
Cow position: chr1:101673829-101673504 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 213
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 64

Conread position: 252-574
Cow position: chr1:57123621-57123306 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 25

Conread position: 253-540
Cow position: chr1:69245343-69245627 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 114, 29

Conread position: 254-571
Cow position: chr1:40534285-40533973 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 213
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 32, 64

Conread position: 255-562
Cow position: chr1:19184567-19184262 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 97

Conread position: 255-575
Cow position: chr1:53395266-53395578 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 140

Conread position: 291-555
Cow position: chr1:3562570-3562309 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 193
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 7, 65

Conread position: 297-577
Cow position: chr1:78361684-78361957 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 60, 91

Conread position: 305-477
Cow position: chr1:43765931-43765759 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 59, 47

Conread position: 321-562
Cow position: chr1:15438114-15437877 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 174
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 43, 31

Conread position: 328-574
Cow position: chr1:77923562-77923805 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 36, 154

Conread position: 331-577
Cow position: chr1:99018226-99017992 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 36, 21

Conread position: 336-577
Cow position: chr1:49322578-49322344 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 31, 16

Conread position: 344-575
Cow position: chr1:81304403-81304631 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 23, 124

Conread position: 372-577
Cow position: chr1:57696139-57695938 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 59, 102

Conread position: 375-577
Cow position: chr1:99109363-99109168 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 12, 0

Conread position: 379-571
Cow position: chr1:88675346-88675532 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 112, 32

Conread position: 386-576
Cow position: chr1:61538396-61538211 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 389-574
Cow position: chr1:19237630-19237449 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 85, 0

Conread position: 399-577
Cow position: chr1:68218885-68218715 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 96, 40

Conread position: 400-574
Cow position: chr1:91672996-91672826 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 74, 0

Show alignments to all cow chromosomes.