Cow genome map
| Conread name: | rret28_b20.y1 |
| Conread position: | 1-562 |
| Cow position: | chr10:39039814-39039244 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 1-574 |
| Cow position: | chr10:38343873-38343292 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 394 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 107 |
| Conread position: | 1-577 |
| Cow position: | chr10:14853342-14853935 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 109 |
| Conread position: | 2-575 |
| Cow position: | chr10:19706144-19705546 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 387 |
| Conread position: | 5-577 |
| Cow position: | chr10:57525820-57525256 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 18 |
| Conread position: | 29-562 |
| Cow position: | chr10:29845134-29844589 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 29-574 |
| Cow position: | chr10:33870812-33871371 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 71 |
| Conread position: | 49-557 |
| Cow position: | chr10:22908917-22908402 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 24 |
| Conread position: | 49-562 |
| Cow position: | chr10:31539679-31540189 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 45 |
| Conread position: | 49-574 |
| Cow position: | chr10:41151187-41150645 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 51 |
| Conread position: | 49-574 |
| Cow position: | chr10:57988449-57987926 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 53 |
| Conread position: | 50-246 |
| Cow position: | chr10:21079159-21079358 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 50-575 |
| Cow position: | chr10:38451079-38451618 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 355 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 132, 50 |
| Conread position: | 56-526 |
| Cow position: | chr10:16927223-16927708 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 46 |
| Conread position: | 56-561 |
| Cow position: | chr10:44081698-44082198 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 105, 37 |
| Conread position: | 56-562 |
| Cow position: | chr10:19841233-19841749 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 56-562 |
| Cow position: | chr10:39439706-39440228 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 46 |
| Conread position: | 56-574 |
| Cow position: | chr10:10172289-10172826 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr10:21739201-21738670 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 44 |
| Conread position: | 56-574 |
| Cow position: | chr10:22346514-22347043 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 56-574 |
| Cow position: | chr10:25651875-25651334 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 44 |
| Conread position: | 56-574 |
| Cow position: | chr10:57555781-57555255 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 44 |
| Conread position: | 56-574 |
| Cow position: | chr10:62407228-62406683 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 46 |
| Conread position: | 56-577 |
| Cow position: | chr10:24976253-24975758 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 44 |
| Conread position: | 56-577 |
| Cow position: | chr10:62585732-62586235 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 335 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 124, 25 |
| Conread position: | 57-562 |
| Cow position: | chr10:39814843-39814327 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 43 |
| Conread position: | 57-562 |
| Cow position: | chr10:42114080-42114579 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 341 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 8, 45 |
| Conread position: | 58-562 |
| Cow position: | chr10:40641503-40642015 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 119 |
| Conread position: | 62-574 |
| Cow position: | chr10:22343037-22343548 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 38 |
| Conread position: | 77-574 |
| Cow position: | chr10:28255833-28255324 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 23 |
| Conread position: | 84-562 |
| Cow position: | chr10:30683909-30683416 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 95-539 |
| Cow position: | chr10:40822813-40822361 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 303 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 98, 73 |
| Conread position: | 99-577 |
| Cow position: | chr10:34909102-34909586 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 97, 16 |
| Conread position: | 118-574 |
| Cow position: | chr10:8325499-8325024 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 59 |
| Conread position: | 127-576 |
| Cow position: | chr10:22583426-22582967 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 50 |
| Conread position: | 138-577 |
| Cow position: | chr10:42642229-42642678 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 31 |
| Conread position: | 235-562 |
| Cow position: | chr10:28032179-28031854 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 241 |
| Conread position: | 238-562 |
| Cow position: | chr10:22575079-22574761 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 239-477 |
| Cow position: | chr10:4997570-4997332 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 128, 116 |
| Conread position: | 244-571 |
| Cow position: | chr10:11822640-11822960 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 108 |
| Conread position: | 244-574 |
| Cow position: | chr10:8340719-8341035 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 47 |
| Conread position: | 244-574 |
| Cow position: | chr10:54127311-54127634 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 61 |
| Conread position: | 244-576 |
| Cow position: | chr10:58811997-58811674 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 244-577 |
| Cow position: | chr10:31045774-31045446 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 246-577 |
| Cow position: | chr10:28529640-28529311 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 103, 165 |
| Conread position: | 247-574 |
| Cow position: | chr10:22250054-22249731 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 252-577 |
| Cow position: | chr10:36468404-36468094 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 259-562 |
| Cow position: | chr10:24295510-24295213 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 108, 36 |
| Conread position: | 259-576 |
| Cow position: | chr10:44670887-44670579 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 291-562 |
| Cow position: | chr10:37127984-37127723 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 295-574 |
| Cow position: | chr10:48169332-48169608 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 72, 180 |
| Conread position: | 305-561 |
| Cow position: | chr10:24310366-24310114 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 312-574 |
| Cow position: | chr10:1664340-1664082 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 52, 40 |
| Conread position: | 313-574 |
| Cow position: | chr10:51951276-51951015 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 51, 39 |
| Conread position: | 325-577 |
| Cow position: | chr10:36428842-36428594 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 10 |
| Conread position: | 331-575 |
| Cow position: | chr10:55285628-55285866 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 101, 66 |
| Conread position: | 355-577 |
| Cow position: | chr10:48745945-48745725 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 12, 129 |
| Conread position: | 363-562 |
| Cow position: | chr10:13851015-13851211 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 67, 7 |
| Conread position: | 370-570 |
| Cow position: | chr10:14844928-14845123 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 121, 30 |
| Conread position: | 371-577 |
| Cow position: | chr10:37108274-37108475 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 101 |
| Conread position: | 402-574 |
| Cow position: | chr10:38741205-38741037 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 406-576 |
| Cow position: | chr10:38722968-38723134 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.