Cow genome map
| Conread name: | rret28_b20.y1 |
| Conread position: | 49-539 |
| Cow position: | chr11:52559705-52559207 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 122, 52 |
| Conread position: | 49-554 |
| Cow position: | chr11:26784441-26784956 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 24 |
| Conread position: | 50-550 |
| Cow position: | chr11:30122655-30122164 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 7 |
| Conread position: | 50-562 |
| Cow position: | chr11:9733493-9732970 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 50 |
| Conread position: | 50-574 |
| Cow position: | chr11:29667407-29666870 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 33 |
| Conread position: | 51-562 |
| Cow position: | chr11:12357213-12356689 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 51 |
| Conread position: | 54-574 |
| Cow position: | chr11:4026420-4025886 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 48 |
| Conread position: | 56-255 |
| Cow position: | chr11:13064791-13064591 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 56-560 |
| Cow position: | chr11:32453025-32453542 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 56-562 |
| Cow position: | chr11:50836474-50835951 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr11:15986445-15986970 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 44 |
| Conread position: | 56-574 |
| Cow position: | chr11:20733041-20732509 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr11:26069845-26069324 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 17 |
| Conread position: | 56-574 |
| Cow position: | chr11:32079594-32079065 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 47 |
| Conread position: | 56-574 |
| Cow position: | chr11:47738346-47737824 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 44 |
| Conread position: | 56-577 |
| Cow position: | chr11:10883482-10884012 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 47 |
| Conread position: | 57-577 |
| Cow position: | chr11:63647256-63647780 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 43 |
| Conread position: | 63-529 |
| Cow position: | chr11:67451693-67452173 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 37 |
| Conread position: | 70-572 |
| Cow position: | chr11:44517659-44517143 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 31 |
| Conread position: | 82-574 |
| Cow position: | chr11:61399885-61399379 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 18 |
| Conread position: | 85-240 |
| Cow position: | chr11:18069715-18069561 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 131, 15 |
| Conread position: | 93-577 |
| Cow position: | chr11:60033001-60032517 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 267 |
| Conread position: | 94-577 |
| Cow position: | chr11:35265095-35265567 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 77, 160 |
| Conread position: | 107-574 |
| Cow position: | chr11:40774771-40774307 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 56 |
| Conread position: | 170-577 |
| Cow position: | chr11:30208466-30208870 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 29 |
| Conread position: | 193-574 |
| Cow position: | chr11:8264860-8265236 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 162 |
| Conread position: | 236-574 |
| Cow position: | chr11:20753390-20753054 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 259, 17 |
| Conread position: | 238-577 |
| Cow position: | chr11:16984806-16984480 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 118, 15 |
| Conread position: | 238-577 |
| Cow position: | chr11:50948920-50948586 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 118 |
| Conread position: | 246-571 |
| Cow position: | chr11:51042730-51043048 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 209, 7 |
| Conread position: | 247-545 |
| Cow position: | chr11:44094220-44093926 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 253-575 |
| Cow position: | chr11:13064568-13064253 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 227 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 9, 100 |
| Conread position: | 253-576 |
| Cow position: | chr11:30189133-30189450 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 30 |
| Conread position: | 253-577 |
| Cow position: | chr11:39428380-39428068 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 254-562 |
| Cow position: | chr11:19101081-19100779 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 85 |
| Conread position: | 277-526 |
| Cow position: | chr11:85732611-85732363 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 95, 10 |
| Conread position: | 281-576 |
| Cow position: | chr11:22725072-22725360 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 283-574 |
| Cow position: | chr11:27726482-27726195 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 69 |
| Conread position: | 370-562 |
| Cow position: | chr11:33603113-33602926 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 121, 23 |
| Conread position: | 388-574 |
| Cow position: | chr11:32453593-32453775 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 86, 0 |
Show alignments to all cow chromosomes.