Cow genome map
| Conread name: | rret28_b20.y1 |
| Conread position: | 1-577 |
| Cow position: | chr15:9003157-9002557 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 112 |
| Conread position: | 37-575 |
| Cow position: | chr15:20355480-20354938 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 72 |
| Conread position: | 49-577 |
| Cow position: | chr15:16286819-16286290 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 359 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 98, 51 |
| Conread position: | 50-439 |
| Cow position: | chr15:4672564-4672967 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 50-561 |
| Cow position: | chr15:3181936-3181421 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 50-562 |
| Cow position: | chr15:4726332-4726855 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 34 |
| Conread position: | 50-562 |
| Cow position: | chr15:32067478-32066956 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 24 |
| Conread position: | 50-574 |
| Cow position: | chr15:4386887-4387417 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 34 |
| Conread position: | 50-574 |
| Cow position: | chr15:6154796-6154267 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 50-574 |
| Cow position: | chr15:6590985-6590450 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 30 |
| Conread position: | 50-574 |
| Cow position: | chr15:35736926-35737460 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 23 |
| Conread position: | 50-576 |
| Cow position: | chr15:10478395-10477863 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 30 |
| Conread position: | 50-576 |
| Cow position: | chr15:11293310-11292775 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 54-245 |
| Cow position: | chr15:36624715-36624531 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 54-574 |
| Cow position: | chr15:53299601-53300122 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 19 |
| Conread position: | 56-470 |
| Cow position: | chr15:13390187-13389764 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 43 |
| Conread position: | 56-562 |
| Cow position: | chr15:35752171-35751646 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 46 |
| Conread position: | 56-570 |
| Cow position: | chr15:58790-59320 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 56-574 |
| Cow position: | chr15:2646515-2645983 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 44 |
| Conread position: | 56-574 |
| Cow position: | chr15:6561721-6562252 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr15:7564131-7564663 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 44 |
| Conread position: | 56-574 |
| Cow position: | chr15:25205870-25205342 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 17 |
| Conread position: | 57-554 |
| Cow position: | chr15:9431097-9431579 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 45 |
| Conread position: | 57-562 |
| Cow position: | chr15:4108173-4107665 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 348 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 144, 43 |
| Conread position: | 57-562 |
| Cow position: | chr15:32712372-32712860 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 43 |
| Conread position: | 57-562 |
| Cow position: | chr15:50122796-50122285 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 43 |
| Conread position: | 74-562 |
| Cow position: | chr15:20850045-20849574 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 82-477 |
| Cow position: | chr15:2588287-2587867 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 292 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 133, 18 |
| Conread position: | 82-574 |
| Cow position: | chr15:5010471-5009963 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 18 |
| Conread position: | 84-562 |
| Cow position: | chr15:7838431-7838922 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 84-574 |
| Cow position: | chr15:2901099-2900588 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 95 |
| Conread position: | 84-574 |
| Cow position: | chr15:3260158-3259655 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 18 |
| Conread position: | 85-574 |
| Cow position: | chr15:32492720-32492218 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 17 |
| Conread position: | 92-562 |
| Cow position: | chr15:40648247-40647754 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 253 |
| Conread position: | 103-562 |
| Cow position: | chr15:21664561-21664089 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 76 |
| Conread position: | 111-562 |
| Cow position: | chr15:6329242-6329695 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 57 |
| Conread position: | 112-561 |
| Cow position: | chr15:3834798-3834349 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 306 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 124-574 |
| Cow position: | chr15:4081034-4080572 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 58 |
| Conread position: | 224-571 |
| Cow position: | chr15:12419387-12419046 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 9 |
| Conread position: | 228-577 |
| Cow position: | chr15:6626893-6627237 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 244 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 144, 15 |
| Conread position: | 231-574 |
| Cow position: | chr15:38981988-38982327 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 122 |
| Conread position: | 237-562 |
| Cow position: | chr15:42531265-42531572 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 15, 87 |
| Conread position: | 238-574 |
| Cow position: | chr15:7261949-7262281 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 131, 114 |
| Conread position: | 238-575 |
| Cow position: | chr15:24288126-24287808 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 130, 21 |
| Conread position: | 244-560 |
| Cow position: | chr15:1318757-1319065 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 5, 10 |
| Conread position: | 244-565 |
| Cow position: | chr15:18022673-18022361 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 88, 151 |
| Conread position: | 247-574 |
| Cow position: | chr15:16190429-16190106 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 250-577 |
| Cow position: | chr15:13678559-13678867 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 241, 32 |
| Conread position: | 253-575 |
| Cow position: | chr15:24041620-24041932 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 34 |
| Conread position: | 259-573 |
| Cow position: | chr15:2018471-2018794 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 260-545 |
| Cow position: | chr15:3752799-3753085 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 25, 30 |
| Conread position: | 283-562 |
| Cow position: | chr15:12640074-12640332 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 295-531 |
| Cow position: | chr15:51912190-51911958 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 70, 54 |
| Conread position: | 300-574 |
| Cow position: | chr15:36624248-36623988 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 316-574 |
| Cow position: | chr15:6614430-6614684 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 56, 36 |
| Conread position: | 317-574 |
| Cow position: | chr15:17076016-17075764 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 325-575 |
| Cow position: | chr15:4860600-4860841 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 335-570 |
| Cow position: | chr15:51219176-51219407 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 341-542 |
| Cow position: | chr15:281213-281017 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 26, 96 |
| Conread position: | 362-562 |
| Cow position: | chr15:21534659-21534467 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 129, 45 |
| Conread position: | 370-574 |
| Cow position: | chr15:36144072-36144272 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 416-577 |
| Cow position: | chr15:6066970-6066812 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 67 |
Show alignments to all cow chromosomes.