Cow genome map
| Conread name: | rret28_b20.y1 |
| Conread position: | 1-562 |
| Cow position: | chr18:46875839-46875279 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 25 |
| Conread position: | 29-554 |
| Cow position: | chr18:54272016-54272531 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 339 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 29-561 |
| Cow position: | chr18:16150096-16150615 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 337 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 40, 59 |
| Conread position: | 29-573 |
| Cow position: | chr18:37663857-37664391 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 57 |
| Conread position: | 32-244 |
| Cow position: | chr18:12237730-12237940 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 49-577 |
| Cow position: | chr18:32769293-32769848 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 54 |
| Conread position: | 50-574 |
| Cow position: | chr18:25921961-25922491 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 35 |
| Conread position: | 50-574 |
| Cow position: | chr18:27988756-27989290 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 50-574 |
| Cow position: | chr18:51482426-51482959 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 52-562 |
| Cow position: | chr18:51274510-51273992 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 42 |
| Conread position: | 56-559 |
| Cow position: | chr18:14131965-14132480 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 46 |
| Conread position: | 56-574 |
| Cow position: | chr18:19353941-19354472 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr18:47743081-47743596 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 44 |
| Conread position: | 59-577 |
| Cow position: | chr18:46867330-46866807 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 37 |
| Conread position: | 79-575 |
| Cow position: | chr18:40344772-40344290 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 44 |
| Conread position: | 84-577 |
| Cow position: | chr18:16869950-16870457 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 351 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 131, 16 |
| Conread position: | 94-574 |
| Cow position: | chr18:11273246-11272753 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 88 |
| Conread position: | 102-560 |
| Cow position: | chr18:16664266-16663795 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 113, 80 |
| Conread position: | 235-562 |
| Cow position: | chr18:23703317-23702994 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 117 |
| Conread position: | 238-554 |
| Cow position: | chr18:2699661-2699344 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 129, 16 |
| Conread position: | 238-562 |
| Cow position: | chr18:16244700-16244385 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 9, 62 |
| Conread position: | 238-574 |
| Cow position: | chr18:37701718-37701387 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 13 |
| Conread position: | 239-571 |
| Cow position: | chr18:5078322-5078000 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 63 |
| Conread position: | 243-574 |
| Cow position: | chr18:37584130-37583802 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 110 |
| Conread position: | 244-577 |
| Cow position: | chr18:1046055-1046378 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 108 |
| Conread position: | 244-577 |
| Cow position: | chr18:26830801-26831125 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 23, 90 |
| Conread position: | 247-574 |
| Cow position: | chr18:16465079-16464756 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 108 |
| Conread position: | 247-574 |
| Cow position: | chr18:23660719-23660393 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 248-577 |
| Cow position: | chr18:35290435-35290759 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 103 |
| Conread position: | 249-577 |
| Cow position: | chr18:999246-999560 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 249-577 |
| Cow position: | chr18:35372972-35372667 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 283-575 |
| Cow position: | chr18:19404653-19404366 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 88, 70 |
| Conread position: | 305-570 |
| Cow position: | chr18:35055613-35055873 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 317-562 |
| Cow position: | chr18:51695830-51696072 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 325-574 |
| Cow position: | chr18:51460985-51460739 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 342-577 |
| Cow position: | chr18:40315555-40315324 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 149, 132 |
| Conread position: | 388-574 |
| Cow position: | chr18:32438185-32438003 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 399-577 |
| Cow position: | chr18:37156812-37156638 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 407-574 |
| Cow position: | chr18:51344041-51344204 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.