Cow genome map
| Conread name: | rret28_b20.y1 |
| Conread position: | 1-562 |
| Cow position: | chr2:50078520-50079099 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 107 |
| Conread position: | 1-574 |
| Cow position: | chr2:32458107-32457506 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 1-577 |
| Cow position: | chr2:38374732-38375317 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 197 |
| Conread position: | 2-575 |
| Cow position: | chr2:19225827-19226411 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 29-574 |
| Cow position: | chr2:14209828-14209278 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 71 |
| Conread position: | 30-577 |
| Cow position: | chr2:72906219-72905665 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 50-561 |
| Cow position: | chr2:32434309-32433790 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 50 |
| Conread position: | 50-562 |
| Cow position: | chr2:10264391-10263875 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 32 |
| Conread position: | 50-562 |
| Cow position: | chr2:42669691-42669163 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 34 |
| Conread position: | 50-574 |
| Cow position: | chr2:8119562-8120095 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 50-574 |
| Cow position: | chr2:12479248-12478709 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 34 |
| Conread position: | 50-574 |
| Cow position: | chr2:26904738-26904221 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 12 |
| Conread position: | 50-574 |
| Cow position: | chr2:32065020-32064497 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 32 |
| Conread position: | 50-574 |
| Cow position: | chr2:47811864-47812402 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 50-574 |
| Cow position: | chr2:80291745-80291215 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 50-577 |
| Cow position: | chr2:85081934-85081395 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 52 |
| Conread position: | 56-562 |
| Cow position: | chr2:25887527-25887013 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 46 |
| Conread position: | 56-562 |
| Cow position: | chr2:65937204-65936687 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 46 |
| Conread position: | 56-571 |
| Cow position: | chr2:52617498-52618025 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 56-574 |
| Cow position: | chr2:364045-363513 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr2:4402128-4401598 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr2:9958051-9957519 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr2:12696445-12695914 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 31 |
| Conread position: | 56-574 |
| Cow position: | chr2:47037411-47036879 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 56-574 |
| Cow position: | chr2:52063782-52064308 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 46 |
| Conread position: | 56-577 |
| Cow position: | chr2:72187480-72186959 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 91 |
| Conread position: | 57-211 |
| Cow position: | chr2:34473571-34473422 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 57-574 |
| Cow position: | chr2:54738511-54739035 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 43 |
| Conread position: | 57-575 |
| Cow position: | chr2:48815306-48815818 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 58-246 |
| Cow position: | chr2:45915816-45915629 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 9, 43 |
| Conread position: | 72-577 |
| Cow position: | chr2:20898942-20898447 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 101, 34 |
| Conread position: | 80-535 |
| Cow position: | chr2:3788826-3788380 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 319 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 126, 20 |
| Conread position: | 84-474 |
| Cow position: | chr2:56888787-56889195 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 18 |
| Conread position: | 84-525 |
| Cow position: | chr2:281634-281182 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 18 |
| Conread position: | 87-574 |
| Cow position: | chr2:2411735-2411271 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 292 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 89-571 |
| Cow position: | chr2:6962564-6963060 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 25 |
| Conread position: | 112-521 |
| Cow position: | chr2:44092448-44092858 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 103 |
| Conread position: | 123-562 |
| Cow position: | chr2:2601792-2602240 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 35 |
| Conread position: | 167-577 |
| Cow position: | chr2:63290735-63290331 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 290 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 28, 46 |
| Conread position: | 178-565 |
| Cow position: | chr2:12328804-12329183 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 203-576 |
| Cow position: | chr2:56897270-56896904 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 85 |
| Conread position: | 228-529 |
| Cow position: | chr2:26155677-26155389 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 146, 17 |
| Conread position: | 235-533 |
| Cow position: | chr2:25022117-25022406 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 5, 120 |
| Conread position: | 238-576 |
| Cow position: | chr2:32411019-32410683 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 114 |
| Conread position: | 239-577 |
| Cow position: | chr2:68763066-68762731 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 237 |
| Conread position: | 244-576 |
| Cow position: | chr2:43961900-43962226 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 43 |
| Conread position: | 244-577 |
| Cow position: | chr2:10131580-10131254 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 70 |
| Conread position: | 247-574 |
| Cow position: | chr2:8085224-8085547 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 247-574 |
| Cow position: | chr2:39117852-39118167 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 250-575 |
| Cow position: | chr2:47621409-47621078 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 7, 188 |
| Conread position: | 253-574 |
| Cow position: | chr2:9909159-9909476 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 102 |
| Conread position: | 254-576 |
| Cow position: | chr2:24749359-24749037 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 113, 69 |
| Conread position: | 255-576 |
| Cow position: | chr2:42331623-42331303 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 112, 94 |
| Conread position: | 263-562 |
| Cow position: | chr2:79245422-79245123 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 130, 52 |
| Conread position: | 264-577 |
| Cow position: | chr2:10137957-10137648 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 85 |
| Conread position: | 277-539 |
| Cow position: | chr2:17824440-17824697 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 76, 94 |
| Conread position: | 277-574 |
| Cow position: | chr2:32863341-32863055 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 90, 78 |
| Conread position: | 288-561 |
| Cow position: | chr2:34580569-34580304 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 203, 71 |
| Conread position: | 305-574 |
| Cow position: | chr2:25743747-25744010 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 305-575 |
| Cow position: | chr2:29217007-29217268 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 310-574 |
| Cow position: | chr2:46184244-46183985 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 313-574 |
| Cow position: | chr2:34501124-34500867 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 51, 39 |
| Conread position: | 313-574 |
| Cow position: | chr2:72792247-72791990 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 325-557 |
| Cow position: | chr2:31449108-31449337 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 73 |
| Conread position: | 352-576 |
| Cow position: | chr2:50405333-50405549 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 352-577 |
| Cow position: | chr2:11693778-11694000 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 10, 136 |
| Conread position: | 358-577 |
| Cow position: | chr2:58566339-58566126 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 133, 81 |
| Conread position: | 366-576 |
| Cow position: | chr2:36995108-36995311 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 376-572 |
| Cow position: | chr2:56755118-56754924 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 104 |
| Conread position: | 386-562 |
| Cow position: | chr2:6640172-6640344 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 386-574 |
| Cow position: | chr2:9963703-9963519 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 402-574 |
| Cow position: | chr2:2182887-2182719 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
Show alignments to all cow chromosomes.