Cow genome map
| Conread name: | rret28_b20.y1 |
| Conread position: | 1-224 |
| Cow position: | chr21:36979908-36980128 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 1-558 |
| Cow position: | chr21:31250594-31251158 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 82 |
| Conread position: | 7-559 |
| Cow position: | chr21:4274408-4273875 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 337 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 27-571 |
| Cow position: | chr21:37149618-37150161 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 65 |
| Conread position: | 33-577 |
| Cow position: | chr21:34000468-33999889 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 49-577 |
| Cow position: | chr21:20770578-20771095 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 355 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 166, 21 |
| Conread position: | 50-570 |
| Cow position: | chr21:13298241-13298757 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 50-574 |
| Cow position: | chr21:26836838-26837370 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 50-574 |
| Cow position: | chr21:28257067-28257601 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 51 |
| Conread position: | 50-574 |
| Cow position: | chr21:28613969-28614501 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 55 |
| Conread position: | 52-565 |
| Cow position: | chr21:4565109-4565622 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 50 |
| Conread position: | 54-577 |
| Cow position: | chr21:25815910-25815381 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 349 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 118, 49 |
| Conread position: | 56-240 |
| Cow position: | chr21:29003885-29003690 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 129 |
| Conread position: | 56-571 |
| Cow position: | chr21:27069312-27068784 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 46 |
| Conread position: | 56-574 |
| Cow position: | chr21:2512502-2513032 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr21:26635505-26634974 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 44 |
| Conread position: | 56-574 |
| Cow position: | chr21:31514664-31514134 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 46 |
| Conread position: | 56-574 |
| Cow position: | chr21:33710801-33711316 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-575 |
| Cow position: | chr21:14645357-14644836 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 352 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 128, 46 |
| Conread position: | 56-577 |
| Cow position: | chr21:38023776-38024288 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 78-561 |
| Cow position: | chr21:26566592-26566102 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 330 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 152, 24 |
| Conread position: | 78-571 |
| Cow position: | chr21:30713-31200 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 24 |
| Conread position: | 83-562 |
| Cow position: | chr21:35774603-35775076 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 84-562 |
| Cow position: | chr21:147602-148091 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 84-562 |
| Cow position: | chr21:10568379-10568862 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 84-574 |
| Cow position: | chr21:30597790-30597285 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 84-574 |
| Cow position: | chr21:44764272-44763771 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 114-562 |
| Cow position: | chr21:17224988-17224521 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 316 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 66, 237 |
| Conread position: | 204-552 |
| Cow position: | chr21:4866044-4865704 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 22, 151 |
| Conread position: | 239-577 |
| Cow position: | chr21:4096530-4096864 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 114 |
| Conread position: | 244-577 |
| Cow position: | chr21:434012-433689 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 105, 22 |
| Conread position: | 246-577 |
| Cow position: | chr21:32832366-32832034 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 71 |
| Conread position: | 249-574 |
| Cow position: | chr21:26401896-26401570 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 108 |
| Conread position: | 249-577 |
| Cow position: | chr21:21025326-21025656 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 42 |
| Conread position: | 253-577 |
| Cow position: | chr21:29003654-29003338 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 100 |
| Conread position: | 259-577 |
| Cow position: | chr21:36980525-36980829 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 269-562 |
| Cow position: | chr21:4036131-4036420 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 83 |
| Conread position: | 270-532 |
| Cow position: | chr21:35404689-35404429 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 15, 20 |
| Conread position: | 271-577 |
| Cow position: | chr21:21942684-21942380 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 8, 82 |
| Conread position: | 288-562 |
| Cow position: | chr21:43564207-43563937 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 305-560 |
| Cow position: | chr21:41797610-41797861 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 343-548 |
| Cow position: | chr21:4139153-4138954 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 148, 35 |
| Conread position: | 346-574 |
| Cow position: | chr21:11290633-11290868 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 139 |
| Conread position: | 363-574 |
| Cow position: | chr21:27149582-27149376 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 378-562 |
| Cow position: | chr21:28263585-28263764 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 112, 47 |
| Conread position: | 396-574 |
| Cow position: | chr21:28853849-28853675 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 95, 78 |
| Conread position: | 408-571 |
| Cow position: | chr21:23652954-23653114 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
Show alignments to all cow chromosomes.