Cow genome map
| Conread name: | rret28_b20.y1 |
| Conread position: | 2-246 |
| Cow position: | chr22:290287-290030 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 185 |
| Conread position: | 49-571 |
| Cow position: | chr22:34601067-34601588 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 52 |
| Conread position: | 50-561 |
| Cow position: | chr22:33352143-33352647 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 20 |
| Conread position: | 50-562 |
| Cow position: | chr22:1519553-1519034 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 33 |
| Conread position: | 50-562 |
| Cow position: | chr22:31333572-31333053 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 34 |
| Conread position: | 50-562 |
| Cow position: | chr22:41474230-41473698 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 33 |
| Conread position: | 50-571 |
| Cow position: | chr22:5936699-5936157 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 54-562 |
| Cow position: | chr22:44368003-44367482 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 46 |
| Conread position: | 56-544 |
| Cow position: | chr22:2563271-2562786 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 14 |
| Conread position: | 56-562 |
| Cow position: | chr22:11803571-11803055 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-562 |
| Cow position: | chr22:35670185-35669671 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 44 |
| Conread position: | 56-562 |
| Cow position: | chr22:36860067-36859552 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 46 |
| Conread position: | 56-562 |
| Cow position: | chr22:39468037-39467515 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 56-562 |
| Cow position: | chr22:44397912-44398436 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 56-574 |
| Cow position: | chr22:3276876-3276342 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr22:18028771-18029281 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 45 |
| Conread position: | 56-574 |
| Cow position: | chr22:30677233-30676702 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 44 |
| Conread position: | 56-574 |
| Cow position: | chr22:34169816-34170347 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 46 |
| Conread position: | 56-574 |
| Cow position: | chr22:37292197-37291665 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 46 |
| Conread position: | 58-574 |
| Cow position: | chr22:11807258-11806738 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 42 |
| Conread position: | 78-571 |
| Cow position: | chr22:1323656-1324158 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 80-562 |
| Cow position: | chr22:44348362-44347883 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 134 |
| Conread position: | 80-574 |
| Cow position: | chr22:44492551-44493060 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 82-245 |
| Cow position: | chr22:8120275-8120110 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 133, 18 |
| Conread position: | 82-561 |
| Cow position: | chr22:30129087-30129578 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 18 |
| Conread position: | 82-574 |
| Cow position: | chr22:29499047-29499552 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 20 |
| Conread position: | 97-562 |
| Cow position: | chr22:18605279-18604800 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 139-574 |
| Cow position: | chr22:8325833-8326256 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 152-577 |
| Cow position: | chr22:31117629-31117228 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 188-574 |
| Cow position: | chr22:25969789-25969409 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 195-577 |
| Cow position: | chr22:13208051-13208426 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 174, 24 |
| Conread position: | 202-562 |
| Cow position: | chr22:18814404-18814037 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 223-574 |
| Cow position: | chr22:35905511-35905160 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 29, 129 |
| Conread position: | 229-577 |
| Cow position: | chr22:36560387-36560057 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 262, 15 |
| Conread position: | 234-560 |
| Cow position: | chr22:23430214-23429893 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 18, 57 |
| Conread position: | 234-560 |
| Cow position: | chr22:35163818-35164139 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 51, 28 |
| Conread position: | 240-534 |
| Cow position: | chr22:290013-289728 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 89, 73 |
| Conread position: | 244-571 |
| Cow position: | chr22:36562747-36562429 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 123, 86 |
| Conread position: | 247-562 |
| Cow position: | chr22:2849901-2849595 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 126, 58 |
| Conread position: | 247-577 |
| Cow position: | chr22:10560939-10561252 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 252-575 |
| Cow position: | chr22:34595446-34595753 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 115, 35 |
| Conread position: | 254-555 |
| Cow position: | chr22:36574309-36574024 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 113, 60 |
| Conread position: | 254-574 |
| Cow position: | chr22:34609386-34609695 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 113, 98 |
| Conread position: | 260-532 |
| Cow position: | chr22:32481432-32481164 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 107, 9 |
| Conread position: | 274-577 |
| Cow position: | chr22:41242093-41242392 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 84 |
| Conread position: | 289-527 |
| Cow position: | chr22:25334349-25334126 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 78, 63 |
| Conread position: | 306-577 |
| Cow position: | chr22:869840-869583 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 185, 46 |
| Conread position: | 317-574 |
| Cow position: | chr22:21194460-21194206 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 349-575 |
| Cow position: | chr22:11781186-11780959 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 138 |
| Conread position: | 352-574 |
| Cow position: | chr22:980077-980296 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 12, 123 |
| Conread position: | 370-574 |
| Cow position: | chr22:5889378-5889174 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 76, 115 |
| Conread position: | 370-574 |
| Cow position: | chr22:37537662-37537461 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 60, 105 |
| Conread position: | 371-577 |
| Cow position: | chr22:30171787-30171990 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 67, 90 |
| Conread position: | 374-575 |
| Cow position: | chr22:8826504-8826308 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 376-577 |
| Cow position: | chr22:7101974-7101778 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 93, 18 |
| Conread position: | 388-574 |
| Cow position: | chr22:37268928-37269109 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 110, 84 |
Show alignments to all cow chromosomes.