Cow genome map
| Conread name: | rret28_b20.y1 |
| Conread position: | 1-246 |
| Cow position: | chr29:2948957-2948698 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 31, 111 |
| Conread position: | 1-574 |
| Cow position: | chr29:43324939-43325535 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 189 |
| Conread position: | 30-577 |
| Cow position: | chr29:15946342-15945797 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 357 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 61 |
| Conread position: | 49-577 |
| Cow position: | chr29:40612383-40611853 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 340 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 50-533 |
| Cow position: | chr29:21431366-21430875 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 19 |
| Conread position: | 50-561 |
| Cow position: | chr29:7429640-7429114 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 50-562 |
| Cow position: | chr29:32287735-32288253 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 50-574 |
| Cow position: | chr29:46973-46441 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 37 |
| Conread position: | 50-574 |
| Cow position: | chr29:2101325-2101860 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 50-574 |
| Cow position: | chr29:19655106-19655639 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 50-574 |
| Cow position: | chr29:31182887-31183423 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 12 |
| Conread position: | 51-574 |
| Cow position: | chr29:8664990-8665523 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 56-562 |
| Cow position: | chr29:609158-608639 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 44 |
| Conread position: | 56-562 |
| Cow position: | chr29:7845880-7846399 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-562 |
| Cow position: | chr29:19526796-19526277 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 56-562 |
| Cow position: | chr29:40501517-40501005 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 46 |
| Conread position: | 56-574 |
| Cow position: | chr29:10022842-10022311 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr29:13018188-13018711 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 44 |
| Conread position: | 56-574 |
| Cow position: | chr29:35298400-35298931 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 44 |
| Conread position: | 56-574 |
| Cow position: | chr29:38207174-38206642 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 44 |
| Conread position: | 84-562 |
| Cow position: | chr29:25931003-25930510 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 18 |
| Conread position: | 84-562 |
| Cow position: | chr29:32541612-32542103 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 18 |
| Conread position: | 84-562 |
| Cow position: | chr29:38228496-38228984 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 84-574 |
| Cow position: | chr29:26163315-26162815 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 19 |
| Conread position: | 99-562 |
| Cow position: | chr29:44601078-44600606 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 114-561 |
| Cow position: | chr29:10645863-10645402 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 65 |
| Conread position: | 238-574 |
| Cow position: | chr29:19621579-19621246 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 238-577 |
| Cow position: | chr29:16014611-16014278 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 6 |
| Conread position: | 240-562 |
| Cow position: | chr29:16730216-16729897 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 133, 112 |
| Conread position: | 244-577 |
| Cow position: | chr29:12794176-12794501 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 70 |
| Conread position: | 248-561 |
| Cow position: | chr29:18007382-18007062 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 112, 104 |
| Conread position: | 249-577 |
| Cow position: | chr29:29617606-29617284 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 118, 65 |
| Conread position: | 277-540 |
| Cow position: | chr29:4879886-4880142 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 252, 75 |
| Conread position: | 289-545 |
| Cow position: | chr29:21536017-21536265 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 299-574 |
| Cow position: | chr29:35275445-35275175 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 310-577 |
| Cow position: | chr29:32038590-32038852 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 57, 42 |
| Conread position: | 379-577 |
| Cow position: | chr29:19731907-19732098 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 386-574 |
| Cow position: | chr29:13606078-13605894 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 418-577 |
| Cow position: | chr29:32961180-32961336 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 112, 62 |
Show alignments to all cow chromosomes.