Cow genome map
| Conread name: | rret28_b20.y1 |
| Conread position: | 1-574 |
| Cow position: | chr3:595472-596063 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 106 |
| Conread position: | 15-562 |
| Cow position: | chr3:16887531-16886978 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 66 |
| Conread position: | 31-577 |
| Cow position: | chr3:64685702-64685163 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 47-244 |
| Cow position: | chr3:42051213-42051011 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 49-244 |
| Cow position: | chr3:70888653-70888855 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 50, 136 |
| Conread position: | 49-535 |
| Cow position: | chr3:54772357-54772851 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 51 |
| Conread position: | 50-571 |
| Cow position: | chr3:43191890-43191358 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 50-574 |
| Cow position: | chr3:56146706-56147237 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 37 |
| Conread position: | 56-533 |
| Cow position: | chr3:27919833-27920302 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 44 |
| Conread position: | 56-562 |
| Cow position: | chr3:7478509-7478002 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 46 |
| Conread position: | 56-562 |
| Cow position: | chr3:46859885-46859369 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 43 |
| Conread position: | 56-562 |
| Cow position: | chr3:64026729-64026213 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 44 |
| Conread position: | 56-562 |
| Cow position: | chr3:69932428-69931912 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 46 |
| Conread position: | 56-572 |
| Cow position: | chr3:29329884-29329355 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 56-574 |
| Cow position: | chr3:44925468-44926000 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr3:49543805-49543275 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 46 |
| Conread position: | 56-574 |
| Cow position: | chr3:68872349-68871820 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr3:72631468-72631990 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 46 |
| Conread position: | 57-562 |
| Cow position: | chr3:40338741-40338223 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 43 |
| Conread position: | 57-577 |
| Cow position: | chr3:13476771-13477284 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 343 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 129, 22 |
| Conread position: | 71-574 |
| Cow position: | chr3:33634669-33635175 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 29 |
| Conread position: | 76-261 |
| Cow position: | chr3:40103798-40103615 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 16, 99 |
| Conread position: | 78-577 |
| Cow position: | chr3:43481223-43481724 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 15 |
| Conread position: | 82-562 |
| Cow position: | chr3:6783800-6784289 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 82-574 |
| Cow position: | chr3:30330689-30330206 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 19 |
| Conread position: | 83-575 |
| Cow position: | chr3:12565991-12565516 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 10 |
| Conread position: | 85-574 |
| Cow position: | chr3:23288899-23288403 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 17 |
| Conread position: | 94-564 |
| Cow position: | chr3:19940373-19940851 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 88 |
| Conread position: | 112-557 |
| Cow position: | chr3:77578675-77578228 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 81 |
| Conread position: | 113-574 |
| Cow position: | chr3:59863024-59863498 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 66 |
| Conread position: | 114-574 |
| Cow position: | chr3:58784693-58784219 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 101 |
| Conread position: | 229-577 |
| Cow position: | chr3:73303117-73303457 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 238-574 |
| Cow position: | chr3:38868197-38868526 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 6 |
| Conread position: | 239-574 |
| Cow position: | chr3:39024477-39024809 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 114 |
| Conread position: | 244-540 |
| Cow position: | chr3:76823300-76823593 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 7, 96 |
| Conread position: | 244-575 |
| Cow position: | chr3:15054094-15053778 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 123, 64 |
| Conread position: | 247-548 |
| Cow position: | chr3:13725171-13724871 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 247-562 |
| Cow position: | chr3:26722795-26723101 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 105 |
| Conread position: | 250-576 |
| Cow position: | chr3:70888903-70889225 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 104 |
| Conread position: | 259-557 |
| Cow position: | chr3:82935929-82936224 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 60, 103 |
| Conread position: | 268-575 |
| Cow position: | chr3:3783376-3783680 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 207 |
| Conread position: | 268-575 |
| Cow position: | chr3:3787236-3787540 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 207 |
| Conread position: | 270-558 |
| Cow position: | chr3:83946596-83946879 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 83, 42 |
| Conread position: | 270-562 |
| Cow position: | chr3:44567566-44567278 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 85, 97 |
| Conread position: | 283-570 |
| Cow position: | chr3:29190426-29190142 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 85, 69 |
| Conread position: | 288-562 |
| Cow position: | chr3:20579818-20579555 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 289-574 |
| Cow position: | chr3:48844650-48844931 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 304-561 |
| Cow position: | chr3:2853731-2853480 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 306-576 |
| Cow position: | chr3:3937532-3937798 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 315-576 |
| Cow position: | chr3:18760717-18760460 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 340-574 |
| Cow position: | chr3:2919325-2919555 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 354-577 |
| Cow position: | chr3:28678599-28678816 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 20, 14 |
| Conread position: | 367-562 |
| Cow position: | chr3:14451694-14451884 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 124, 69 |
| Conread position: | 368-575 |
| Cow position: | chr3:8751075-8751286 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 101, 9 |
| Conread position: | 376-577 |
| Cow position: | chr3:67628973-67628781 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 192, 47 |
| Conread position: | 416-562 |
| Cow position: | chr3:60080911-60080769 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 75, 63 |
Show alignments to all cow chromosomes.