Cow genome map

Conread name: rret28_b20.y1

Conread position: 1-562
Cow position: chr4:19005174-19004603 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 69

Conread position: 1-574
Cow position: chr4:18423377-18422785 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 190

Conread position: 1-574
Cow position: chr4:65916417-65916991 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 14

Conread position: 1-577
Cow position: chr4:19094124-19094711 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 7

Conread position: 18-577
Cow position: chr4:964143-963593 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 69

Conread position: 28-562
Cow position: chr4:1952392-1951837 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 78

Conread position: 33-574
Cow position: chr4:1929455-1928899 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 30

Conread position: 49-559
Cow position: chr4:65041428-65040908 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 53

Conread position: 49-562
Cow position: chr4:44742040-44741539 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 13

Conread position: 49-575
Cow position: chr4:6206811-6207333 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 15

Conread position: 50-240
Cow position: chr4:50975823-50976000 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 24

Conread position: 50-562
Cow position: chr4:6567584-6568107 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 31

Conread position: 50-574
Cow position: chr4:1049058-1048523 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 34

Conread position: 50-574
Cow position: chr4:44780022-44779486 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 129

Conread position: 51-545
Cow position: chr4:5881362-5881871 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 18

Conread position: 52-574
Cow position: chr4:99012-98473 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 48

Conread position: 56-540
Cow position: chr4:9355588-9356084 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 44

Conread position: 56-557
Cow position: chr4:827417-827931 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 44

Conread position: 56-562
Cow position: chr4:33494764-33495284 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 46

Conread position: 56-562
Cow position: chr4:44726787-44727304 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 46

Conread position: 56-574
Cow position: chr4:604839-605356 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 44

Conread position: 56-574
Cow position: chr4:5443616-5443085 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 44

Conread position: 56-574
Cow position: chr4:12240015-12239500 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 47

Conread position: 56-574
Cow position: chr4:17502122-17501591 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 44

Conread position: 56-574
Cow position: chr4:17924752-17924221 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 46

Conread position: 56-574
Cow position: chr4:25598276-25597746 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 46

Conread position: 56-574
Cow position: chr4:48028070-48028592 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 46

Conread position: 56-576
Cow position: chr4:22742636-22743140 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 367
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 83, 38

Conread position: 62-562
Cow position: chr4:14387036-14387544 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 38

Conread position: 78-536
Cow position: chr4:13958401-13958866 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 22

Conread position: 78-560
Cow position: chr4:61986044-61985564 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 329
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 115, 24

Conread position: 80-562
Cow position: chr4:28832950-28833452 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 343
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 117, 9

Conread position: 82-532
Cow position: chr4:28149652-28150108 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 21

Conread position: 82-574
Cow position: chr4:3127046-3127551 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 18

Conread position: 83-540
Cow position: chr4:26627708-26627229 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 311
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 88, 10

Conread position: 84-560
Cow position: chr4:16639847-16640334 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 20

Conread position: 90-525
Cow position: chr4:52230033-52229595 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 291
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 60

Conread position: 103-562
Cow position: chr4:46666176-46666636 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 15

Conread position: 111-572
Cow position: chr4:1366741-1366274 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 19

Conread position: 115-561
Cow position: chr4:68837731-68837266 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 286

Conread position: 115-562
Cow position: chr4:60649709-60650173 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 323
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 73, 247

Conread position: 224-577
Cow position: chr4:34222143-34222487 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 29

Conread position: 228-476
Cow position: chr4:64182120-64181881 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 169
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 137, 17

Conread position: 228-536
Cow position: chr4:9133870-9133576 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 222
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 141, 16

Conread position: 240-576
Cow position: chr4:21974258-21973921 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 236
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 12, 34

Conread position: 244-577
Cow position: chr4:50976031-50976347 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 238
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 125, 77

Conread position: 247-574
Cow position: chr4:7731035-7730713 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 55

Conread position: 247-574
Cow position: chr4:15460848-15460525 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 105

Conread position: 258-576
Cow position: chr4:6449204-6448895 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 218
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 175, 35

Conread position: 263-577
Cow position: chr4:51748890-51748582 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 208
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 107, 78

Conread position: 264-562
Cow position: chr4:7784680-7784974 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 193
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 60, 99

Conread position: 306-574
Cow position: chr4:25225842-25225578 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 185
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 62, 46

Conread position: 312-577
Cow position: chr4:45655682-45655426 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 180
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 23

Conread position: 328-574
Cow position: chr4:40216334-40216576 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 36, 24

Conread position: 343-577
Cow position: chr4:28860520-28860753 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 161
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 24, 131

Conread position: 350-574
Cow position: chr4:46586385-46586163 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 14, 126

Conread position: 370-577
Cow position: chr4:41297107-41296904 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 168, 66

Conread position: 371-576
Cow position: chr4:20605196-20605392 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 157
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 58, 36

Conread position: 376-561
Cow position: chr4:31563677-31563494 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 100

Show alignments to all cow chromosomes.