Cow genome map
Conread name: | rret28_b20.y1 |
Conread position: | 1-562 |
Cow position: | chr4:19005174-19004603 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 69 |
Conread position: | 1-574 |
Cow position: | chr4:18423377-18422785 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 190 |
Conread position: | 1-574 |
Cow position: | chr4:65916417-65916991 (view UCSC Genome Browser custom track) |
Alignm length: | 590 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 14 |
Conread position: | 1-577 |
Cow position: | chr4:19094124-19094711 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 417 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 7 |
Conread position: | 18-577 |
Cow position: | chr4:964143-963593 (view UCSC Genome Browser custom track) |
Alignm length: | 579 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 69 |
Conread position: | 28-562 |
Cow position: | chr4:1952392-1951837 (view UCSC Genome Browser custom track) |
Alignm length: | 563 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 78 |
Conread position: | 33-574 |
Cow position: | chr4:1929455-1928899 (view UCSC Genome Browser custom track) |
Alignm length: | 565 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 30 |
Conread position: | 49-559 |
Cow position: | chr4:65041428-65040908 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 53 |
Conread position: | 49-562 |
Cow position: | chr4:44742040-44741539 (view UCSC Genome Browser custom track) |
Alignm length: | 519 |
Alignm identity: | 354 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 152, 13 |
Conread position: | 49-575 |
Cow position: | chr4:6206811-6207333 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 15 |
Conread position: | 50-240 |
Cow position: | chr4:50975823-50976000 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 147 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 11, 24 |
Conread position: | 50-562 |
Cow position: | chr4:6567584-6568107 (view UCSC Genome Browser custom track) |
Alignm length: | 535 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 31 |
Conread position: | 50-574 |
Cow position: | chr4:1049058-1048523 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 34 |
Conread position: | 50-574 |
Cow position: | chr4:44780022-44779486 (view UCSC Genome Browser custom track) |
Alignm length: | 551 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 129 |
Conread position: | 51-545 |
Cow position: | chr4:5881362-5881871 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 18 |
Conread position: | 52-574 |
Cow position: | chr4:99012-98473 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 48 |
Conread position: | 56-540 |
Cow position: | chr4:9355588-9356084 (view UCSC Genome Browser custom track) |
Alignm length: | 506 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 44 |
Conread position: | 56-557 |
Cow position: | chr4:827417-827931 (view UCSC Genome Browser custom track) |
Alignm length: | 522 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 44 |
Conread position: | 56-562 |
Cow position: | chr4:33494764-33495284 (view UCSC Genome Browser custom track) |
Alignm length: | 528 |
Alignm identity: | 359 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 46 |
Conread position: | 56-562 |
Cow position: | chr4:44726787-44727304 (view UCSC Genome Browser custom track) |
Alignm length: | 527 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 46 |
Conread position: | 56-574 |
Cow position: | chr4:604839-605356 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 44 |
Conread position: | 56-574 |
Cow position: | chr4:5443616-5443085 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 44 |
Conread position: | 56-574 |
Cow position: | chr4:12240015-12239500 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 47 |
Conread position: | 56-574 |
Cow position: | chr4:17502122-17501591 (view UCSC Genome Browser custom track) |
Alignm length: | 539 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 44 |
Conread position: | 56-574 |
Cow position: | chr4:17924752-17924221 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 46 |
Conread position: | 56-574 |
Cow position: | chr4:25598276-25597746 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 46 |
Conread position: | 56-574 |
Cow position: | chr4:48028070-48028592 (view UCSC Genome Browser custom track) |
Alignm length: | 537 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 158, 46 |
Conread position: | 56-576 |
Cow position: | chr4:22742636-22743140 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 367 |
Alignm E-value: | 6e-37 |
Alignm gaps (pig, cow): | 83, 38 |
Conread position: | 62-562 |
Cow position: | chr4:14387036-14387544 (view UCSC Genome Browser custom track) |
Alignm length: | 521 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 38 |
Conread position: | 78-536 |
Cow position: | chr4:13958401-13958866 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 22 |
Conread position: | 78-560 |
Cow position: | chr4:61986044-61985564 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 329 |
Alignm E-value: | 3.99931e-42 |
Alignm gaps (pig, cow): | 115, 24 |
Conread position: | 80-562 |
Cow position: | chr4:28832950-28833452 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 343 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 117, 9 |
Conread position: | 82-532 |
Cow position: | chr4:28149652-28150108 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 332 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 21 |
Conread position: | 82-574 |
Cow position: | chr4:3127046-3127551 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 18 |
Conread position: | 83-540 |
Cow position: | chr4:26627708-26627229 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 311 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 88, 10 |
Conread position: | 84-560 |
Cow position: | chr4:16639847-16640334 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 20 |
Conread position: | 90-525 |
Cow position: | chr4:52230033-52229595 (view UCSC Genome Browser custom track) |
Alignm length: | 455 |
Alignm identity: | 291 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 116, 60 |
Conread position: | 103-562 |
Cow position: | chr4:46666176-46666636 (view UCSC Genome Browser custom track) |
Alignm length: | 471 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 15 |
Conread position: | 111-572 |
Cow position: | chr4:1366741-1366274 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 19 |
Conread position: | 115-561 |
Cow position: | chr4:68837731-68837266 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 286 |
Conread position: | 115-562 |
Cow position: | chr4:60649709-60650173 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 323 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 73, 247 |
Conread position: | 224-577 |
Cow position: | chr4:34222143-34222487 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 29 |
Conread position: | 228-476 |
Cow position: | chr4:64182120-64181881 (view UCSC Genome Browser custom track) |
Alignm length: | 251 |
Alignm identity: | 169 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 137, 17 |
Conread position: | 228-536 |
Cow position: | chr4:9133870-9133576 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 222 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 141, 16 |
Conread position: | 240-576 |
Cow position: | chr4:21974258-21973921 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 236 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 12, 34 |
Conread position: | 244-577 |
Cow position: | chr4:50976031-50976347 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 238 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 125, 77 |
Conread position: | 247-574 |
Cow position: | chr4:7731035-7730713 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 55 |
Conread position: | 247-574 |
Cow position: | chr4:15460848-15460525 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 105 |
Conread position: | 258-576 |
Cow position: | chr4:6449204-6448895 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 218 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 175, 35 |
Conread position: | 263-577 |
Cow position: | chr4:51748890-51748582 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 208 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 107, 78 |
Conread position: | 264-562 |
Cow position: | chr4:7784680-7784974 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 193 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 60, 99 |
Conread position: | 306-574 |
Cow position: | chr4:25225842-25225578 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 185 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 62, 46 |
Conread position: | 312-577 |
Cow position: | chr4:45655682-45655426 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 180 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 48, 23 |
Conread position: | 328-574 |
Cow position: | chr4:40216334-40216576 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 177 |
Alignm E-value: | 6e-37 |
Alignm gaps (pig, cow): | 36, 24 |
Conread position: | 343-577 |
Cow position: | chr4:28860520-28860753 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 161 |
Alignm E-value: | 7e-27 |
Alignm gaps (pig, cow): | 24, 131 |
Conread position: | 350-574 |
Cow position: | chr4:46586385-46586163 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 157 |
Alignm E-value: | 8e-28 |
Alignm gaps (pig, cow): | 14, 126 |
Conread position: | 370-577 |
Cow position: | chr4:41297107-41296904 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 157 |
Alignm E-value: | 6e-36 |
Alignm gaps (pig, cow): | 168, 66 |
Conread position: | 371-576 |
Cow position: | chr4:20605196-20605392 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 157 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 58, 36 |
Conread position: | 376-561 |
Cow position: | chr4:31563677-31563494 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 134 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 49, 100 |
Show alignments to all cow chromosomes.