Cow genome map
| Conread name: | rret28_b20.y1 |
| Conread position: | 1-574 |
| Cow position: | chr5:7275082-7275672 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 110 |
| Conread position: | 1-574 |
| Cow position: | chr5:29767365-29767941 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 3-477 |
| Cow position: | chr5:23755222-23754734 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 26-572 |
| Cow position: | chr5:46646263-46646831 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 385 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 27-577 |
| Cow position: | chr5:49130514-49131052 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 148 |
| Conread position: | 36-577 |
| Cow position: | chr5:23668845-23668307 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 359 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 93, 44 |
| Conread position: | 37-576 |
| Cow position: | chr5:16102774-16102226 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 49-562 |
| Cow position: | chr5:64780709-64780182 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 53 |
| Conread position: | 49-577 |
| Cow position: | chr5:18885226-18884713 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 51 |
| Conread position: | 50-246 |
| Cow position: | chr5:50947933-50948137 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 50-561 |
| Cow position: | chr5:2915742-2916259 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 50-561 |
| Cow position: | chr5:23959022-23958500 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 50-562 |
| Cow position: | chr5:48533261-48533775 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 298 |
| Conread position: | 50-574 |
| Cow position: | chr5:18121174-18120639 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 50-574 |
| Cow position: | chr5:40923344-40922837 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 7 |
| Conread position: | 50-577 |
| Cow position: | chr5:18400392-18399860 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 53-574 |
| Cow position: | chr5:10842072-10841538 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 47 |
| Conread position: | 54-562 |
| Cow position: | chr5:3787247-3787768 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 48 |
| Conread position: | 54-562 |
| Cow position: | chr5:48544729-48545230 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 343 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 15, 54 |
| Conread position: | 56-477 |
| Cow position: | chr5:987756-987318 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-515 |
| Cow position: | chr5:35527241-35527713 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 137, 12 |
| Conread position: | 56-559 |
| Cow position: | chr5:49757395-49756883 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 15 |
| Conread position: | 56-562 |
| Cow position: | chr5:3502796-3502272 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 56-562 |
| Cow position: | chr5:58197328-58197847 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 56-574 |
| Cow position: | chr5:4684492-4683963 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr5:6153586-6153054 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 46 |
| Conread position: | 56-574 |
| Cow position: | chr5:10813438-10812907 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr5:10855505-10854977 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 46 |
| Conread position: | 56-574 |
| Cow position: | chr5:18560095-18559567 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 46 |
| Conread position: | 56-574 |
| Cow position: | chr5:26077881-26077347 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr5:31707875-31708404 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr5:46777705-46778236 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr5:59061948-59062478 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 44 |
| Conread position: | 57-574 |
| Cow position: | chr5:46665331-46665841 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 43 |
| Conread position: | 80-575 |
| Cow position: | chr5:24104131-24103635 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 97 |
| Conread position: | 82-574 |
| Cow position: | chr5:307075-306571 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 18 |
| Conread position: | 82-574 |
| Cow position: | chr5:51744613-51745108 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 18 |
| Conread position: | 84-574 |
| Cow position: | chr5:30580684-30581177 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 18 |
| Conread position: | 86-562 |
| Cow position: | chr5:6534508-6534971 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 7 |
| Conread position: | 89-562 |
| Cow position: | chr5:4070561-4071044 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 13 |
| Conread position: | 105-545 |
| Cow position: | chr5:54860614-54860173 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 75 |
| Conread position: | 111-576 |
| Cow position: | chr5:14784000-14783548 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 71 |
| Conread position: | 225-559 |
| Cow position: | chr5:34904127-34904448 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 235-574 |
| Cow position: | chr5:49118831-49118497 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 118 |
| Conread position: | 238-535 |
| Cow position: | chr5:3424872-3425168 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 238-540 |
| Cow position: | chr5:50948159-50948456 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 114 |
| Conread position: | 238-574 |
| Cow position: | chr5:58191250-58190919 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 65 |
| Conread position: | 240-562 |
| Cow position: | chr5:46288914-46289228 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 244-562 |
| Cow position: | chr5:41897030-41896712 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 23, 120 |
| Conread position: | 247-572 |
| Cow position: | chr5:20405564-20405871 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 6 |
| Conread position: | 247-574 |
| Cow position: | chr5:50505153-50505479 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 249-577 |
| Cow position: | chr5:10449518-10449845 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 118, 103 |
| Conread position: | 253-574 |
| Cow position: | chr5:41960115-41959804 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 114, 70 |
| Conread position: | 259-562 |
| Cow position: | chr5:54787588-54787291 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 39 |
| Conread position: | 272-574 |
| Cow position: | chr5:31327080-31327376 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 92, 17 |
| Conread position: | 288-577 |
| Cow position: | chr5:76340452-76340168 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 308-560 |
| Cow position: | chr5:26406001-26405757 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 310-574 |
| Cow position: | chr5:59084566-59084307 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 327-574 |
| Cow position: | chr5:46791443-46791687 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 5, 26 |
| Conread position: | 331-543 |
| Cow position: | chr5:5894637-5894845 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 370-575 |
| Cow position: | chr5:16057764-16057561 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 121, 93 |
Show alignments to all cow chromosomes.