Cow genome map

Conread name: rret28_b20.y1

Conread position: 1-571
Cow position: chr6:41228825-41229421 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 190

Conread position: 12-576
Cow position: chr6:10632941-10633505 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 372
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 36, 8

Conread position: 49-574
Cow position: chr6:26669419-26668882 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 51

Conread position: 49-574
Cow position: chr6:28104421-28103884 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 51

Conread position: 50-562
Cow position: chr6:30273448-30272928 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 33

Conread position: 50-562
Cow position: chr6:65907342-65906822 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 21

Conread position: 50-570
Cow position: chr6:28475161-28475712 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 125

Conread position: 50-574
Cow position: chr6:703655-704192 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 52

Conread position: 50-574
Cow position: chr6:21835751-21835220 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 31

Conread position: 50-574
Cow position: chr6:28170353-28170887 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 32

Conread position: 50-574
Cow position: chr6:51731527-51732056 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 33

Conread position: 50-575
Cow position: chr6:17243853-17243317 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 10

Conread position: 50-577
Cow position: chr6:69144009-69144553 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 52

Conread position: 53-562
Cow position: chr6:59594373-59594867 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 330
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 191, 20

Conread position: 54-559
Cow position: chr6:6158164-6158661 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 42

Conread position: 56-562
Cow position: chr6:330014-329497 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 44

Conread position: 56-562
Cow position: chr6:52694476-52694996 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 45

Conread position: 56-562
Cow position: chr6:65843065-65843575 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 46

Conread position: 56-574
Cow position: chr6:13309929-13309406 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 44

Conread position: 56-574
Cow position: chr6:15139724-15139193 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 48

Conread position: 56-574
Cow position: chr6:17596846-17596315 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 44

Conread position: 56-574
Cow position: chr6:28187370-28186858 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 44

Conread position: 56-574
Cow position: chr6:40317046-40317552 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 352
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 146, 16

Conread position: 56-574
Cow position: chr6:59617545-59618061 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 22

Conread position: 56-576
Cow position: chr6:7834935-7835450 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 37

Conread position: 57-571
Cow position: chr6:238396-237875 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 45

Conread position: 58-571
Cow position: chr6:40553129-40552605 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 44

Conread position: 82-543
Cow position: chr6:59502843-59503311 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 18

Conread position: 84-562
Cow position: chr6:5948304-5947816 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 19

Conread position: 84-574
Cow position: chr6:27528540-27528040 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 18

Conread position: 228-577
Cow position: chr6:15641594-15641252 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 242
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 144, 16

Conread position: 245-561
Cow position: chr6:2580076-2580382 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 215
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 121, 80

Conread position: 247-562
Cow position: chr6:62578542-62578230 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 109

Conread position: 247-562
Cow position: chr6:62663374-62663681 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 105

Conread position: 247-574
Cow position: chr6:28642881-28642558 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 105

Conread position: 247-574
Cow position: chr6:68028804-68029129 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 105

Conread position: 248-574
Cow position: chr6:43431700-43431378 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 104

Conread position: 249-575
Cow position: chr6:12405783-12405464 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 223
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 100, 117

Conread position: 254-558
Cow position: chr6:8759628-8759328 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 98

Conread position: 254-562
Cow position: chr6:8203859-8204155 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 98

Conread position: 254-577
Cow position: chr6:25360972-25361287 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 223
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 104, 85

Conread position: 283-562
Cow position: chr6:40128149-40128420 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 188
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 75, 6

Conread position: 288-574
Cow position: chr6:50718370-50718652 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 76, 67

Conread position: 289-562
Cow position: chr6:6492979-6492718 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 184
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 72, 0

Conread position: 297-574
Cow position: chr6:13978459-13978731 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 67, 8

Conread position: 310-575
Cow position: chr6:60513767-60514028 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 189
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 59, 42

Conread position: 316-574
Cow position: chr6:20352371-20352117 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 48, 36

Conread position: 316-574
Cow position: chr6:46296014-46296268 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 48, 36

Conread position: 339-570
Cow position: chr6:19016949-19017175 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 28, 13

Conread position: 343-558
Cow position: chr6:25791942-25791734 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 80, 0

Conread position: 362-574
Cow position: chr6:50487040-50486826 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 5, 118

Conread position: 369-577
Cow position: chr6:53671860-53672062 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 72, 46

Show alignments to all cow chromosomes.