Cow genome map
| Conread name: | rret28_b20.y1 |
| Conread position: | 1-571 |
| Cow position: | chr6:41228825-41229421 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 190 |
| Conread position: | 12-576 |
| Cow position: | chr6:10632941-10633505 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 372 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 49-574 |
| Cow position: | chr6:26669419-26668882 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 51 |
| Conread position: | 49-574 |
| Cow position: | chr6:28104421-28103884 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 51 |
| Conread position: | 50-562 |
| Cow position: | chr6:30273448-30272928 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 33 |
| Conread position: | 50-562 |
| Cow position: | chr6:65907342-65906822 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 50-570 |
| Cow position: | chr6:28475161-28475712 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 50-574 |
| Cow position: | chr6:703655-704192 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 52 |
| Conread position: | 50-574 |
| Cow position: | chr6:21835751-21835220 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 50-574 |
| Cow position: | chr6:28170353-28170887 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 32 |
| Conread position: | 50-574 |
| Cow position: | chr6:51731527-51732056 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 33 |
| Conread position: | 50-575 |
| Cow position: | chr6:17243853-17243317 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 10 |
| Conread position: | 50-577 |
| Cow position: | chr6:69144009-69144553 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 53-562 |
| Cow position: | chr6:59594373-59594867 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 191, 20 |
| Conread position: | 54-559 |
| Cow position: | chr6:6158164-6158661 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 56-562 |
| Cow position: | chr6:330014-329497 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 44 |
| Conread position: | 56-562 |
| Cow position: | chr6:52694476-52694996 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 45 |
| Conread position: | 56-562 |
| Cow position: | chr6:65843065-65843575 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 46 |
| Conread position: | 56-574 |
| Cow position: | chr6:13309929-13309406 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 44 |
| Conread position: | 56-574 |
| Cow position: | chr6:15139724-15139193 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 48 |
| Conread position: | 56-574 |
| Cow position: | chr6:17596846-17596315 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 44 |
| Conread position: | 56-574 |
| Cow position: | chr6:28187370-28186858 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 44 |
| Conread position: | 56-574 |
| Cow position: | chr6:40317046-40317552 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 352 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 146, 16 |
| Conread position: | 56-574 |
| Cow position: | chr6:59617545-59618061 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 56-576 |
| Cow position: | chr6:7834935-7835450 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 37 |
| Conread position: | 57-571 |
| Cow position: | chr6:238396-237875 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 45 |
| Conread position: | 58-571 |
| Cow position: | chr6:40553129-40552605 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 44 |
| Conread position: | 82-543 |
| Cow position: | chr6:59502843-59503311 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 84-562 |
| Cow position: | chr6:5948304-5947816 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 84-574 |
| Cow position: | chr6:27528540-27528040 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 18 |
| Conread position: | 228-577 |
| Cow position: | chr6:15641594-15641252 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 144, 16 |
| Conread position: | 245-561 |
| Cow position: | chr6:2580076-2580382 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 121, 80 |
| Conread position: | 247-562 |
| Cow position: | chr6:62578542-62578230 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 109 |
| Conread position: | 247-562 |
| Cow position: | chr6:62663374-62663681 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 247-574 |
| Cow position: | chr6:28642881-28642558 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 247-574 |
| Cow position: | chr6:68028804-68029129 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 248-574 |
| Cow position: | chr6:43431700-43431378 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 104 |
| Conread position: | 249-575 |
| Cow position: | chr6:12405783-12405464 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 100, 117 |
| Conread position: | 254-558 |
| Cow position: | chr6:8759628-8759328 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 98 |
| Conread position: | 254-562 |
| Cow position: | chr6:8203859-8204155 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 98 |
| Conread position: | 254-577 |
| Cow position: | chr6:25360972-25361287 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 104, 85 |
| Conread position: | 283-562 |
| Cow position: | chr6:40128149-40128420 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 75, 6 |
| Conread position: | 288-574 |
| Cow position: | chr6:50718370-50718652 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 76, 67 |
| Conread position: | 289-562 |
| Cow position: | chr6:6492979-6492718 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 297-574 |
| Cow position: | chr6:13978459-13978731 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 67, 8 |
| Conread position: | 310-575 |
| Cow position: | chr6:60513767-60514028 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 316-574 |
| Cow position: | chr6:20352371-20352117 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 316-574 |
| Cow position: | chr6:46296014-46296268 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 339-570 |
| Cow position: | chr6:19016949-19017175 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 343-558 |
| Cow position: | chr6:25791942-25791734 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 362-574 |
| Cow position: | chr6:50487040-50486826 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 5, 118 |
| Conread position: | 369-577 |
| Cow position: | chr6:53671860-53672062 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 72, 46 |
Show alignments to all cow chromosomes.