Cow genome map
| Conread name: | rret28_b20.y1 |
| Conread position: | 1-161 |
| Cow position: | chr8:32648164-32648324 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 41 |
| Conread position: | 1-229 |
| Cow position: | chr8:9963850-9963620 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 49, 105 |
| Conread position: | 1-476 |
| Cow position: | chr8:58184938-58184449 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 337 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 31, 104 |
| Conread position: | 1-562 |
| Cow position: | chr8:21205226-21205783 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 92 |
| Conread position: | 4-571 |
| Cow position: | chr8:47674505-47675091 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 30-571 |
| Cow position: | chr8:24227994-24228530 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 63 |
| Conread position: | 31-562 |
| Cow position: | chr8:27718595-27719139 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 345 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 45-548 |
| Cow position: | chr8:41643969-41643457 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 48-577 |
| Cow position: | chr8:25438264-25438787 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 35 |
| Conread position: | 49-577 |
| Cow position: | chr8:34109599-34110138 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 51 |
| Conread position: | 50-562 |
| Cow position: | chr8:8400369-8399859 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 50-562 |
| Cow position: | chr8:10741923-10741401 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 50-577 |
| Cow position: | chr8:16090563-16091105 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 39 |
| Conread position: | 54-562 |
| Cow position: | chr8:42469386-42469915 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 359 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 46, 70 |
| Conread position: | 54-577 |
| Cow position: | chr8:42440227-42439694 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 100 |
| Conread position: | 56-248 |
| Cow position: | chr8:55086256-55086447 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 159, 38 |
| Conread position: | 56-476 |
| Cow position: | chr8:3855298-3854861 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 56-545 |
| Cow position: | chr8:10750077-10750575 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 44 |
| Conread position: | 56-562 |
| Cow position: | chr8:32317822-32317315 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 46 |
| Conread position: | 56-562 |
| Cow position: | chr8:47068090-47067575 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 37 |
| Conread position: | 56-574 |
| Cow position: | chr8:33325777-33326308 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 44 |
| Conread position: | 56-574 |
| Cow position: | chr8:45794025-45793499 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 46 |
| Conread position: | 56-577 |
| Cow position: | chr8:18210730-18210201 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 44 |
| Conread position: | 62-562 |
| Cow position: | chr8:8516866-8516349 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 38 |
| Conread position: | 68-571 |
| Cow position: | chr8:25774912-25774393 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 112 |
| Conread position: | 74-444 |
| Cow position: | chr8:44700726-44701109 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 78-554 |
| Cow position: | chr8:43181237-43180763 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 140, 22 |
| Conread position: | 83-574 |
| Cow position: | chr8:1152515-1152019 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 17 |
| Conread position: | 84-574 |
| Cow position: | chr8:35471056-35471559 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 16 |
| Conread position: | 100-562 |
| Cow position: | chr8:24190735-24191208 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 68 |
| Conread position: | 125-574 |
| Cow position: | chr8:44241897-44241435 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 54 |
| Conread position: | 144-577 |
| Cow position: | chr8:32648533-32648966 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 5 |
| Conread position: | 154-575 |
| Cow position: | chr8:30442636-30442223 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 224-545 |
| Cow position: | chr8:19190604-19190914 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 144, 29 |
| Conread position: | 236-575 |
| Cow position: | chr8:18054654-18054986 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 66 |
| Conread position: | 238-577 |
| Cow position: | chr8:24870555-24870226 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 15 |
| Conread position: | 244-535 |
| Cow position: | chr8:51857910-51858184 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 244-574 |
| Cow position: | chr8:45158595-45158277 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 130, 108 |
| Conread position: | 247-560 |
| Cow position: | chr8:37093589-37093284 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 104, 64 |
| Conread position: | 247-574 |
| Cow position: | chr8:36786873-36786546 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 105 |
| Conread position: | 247-574 |
| Cow position: | chr8:38194366-38194681 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 168, 27 |
| Conread position: | 249-491 |
| Cow position: | chr8:13316204-13315966 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 118, 15 |
| Conread position: | 249-574 |
| Cow position: | chr8:49218678-49218999 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 103 |
| Conread position: | 249-577 |
| Cow position: | chr8:55086483-55086802 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 103 |
| Conread position: | 259-545 |
| Cow position: | chr8:12103846-12104126 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 259-562 |
| Cow position: | chr8:8904126-8903829 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 108, 96 |
| Conread position: | 277-561 |
| Cow position: | chr8:6464834-6465114 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 75 |
| Conread position: | 278-574 |
| Cow position: | chr8:16268669-16268375 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 86, 74 |
| Conread position: | 288-562 |
| Cow position: | chr8:29037028-29037295 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 65, 42 |
| Conread position: | 288-577 |
| Cow position: | chr8:21231066-21231342 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 203, 73 |
| Conread position: | 306-564 |
| Cow position: | chr8:52642064-52641812 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 46 |
| Conread position: | 312-562 |
| Cow position: | chr8:39193925-39193681 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 60, 40 |
| Conread position: | 316-562 |
| Cow position: | chr8:5019013-5019255 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 363-561 |
| Cow position: | chr8:1581497-1581691 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 128, 111 |
| Conread position: | 366-576 |
| Cow position: | chr8:49414128-49414334 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 125, 108 |
| Conread position: | 371-574 |
| Cow position: | chr8:42319213-42319015 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 371-577 |
| Cow position: | chr8:34405432-34405633 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 67, 40 |
Show alignments to all cow chromosomes.