Cow genome map

Conread name: rret28_b20.y1

Conread position: 1-161
Cow position:
Alignm length: 165
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 59, 41

Conread position: 1-229
Cow position:
Alignm length: 240
Alignm identity: 171
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 49, 105

Conread position: 1-476
Cow position:
Alignm length: 508
Alignm identity: 337
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 31, 104

Conread position: 1-562
Cow position:
Alignm length: 575
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 92

Conread position: 4-571
Cow position:
Alignm length: 597
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 20

Conread position: 30-571
Cow position:
Alignm length: 550
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 63

Conread position: 31-562
Cow position:
Alignm length: 554
Alignm identity: 345
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 29, 15

Conread position: 45-548
Cow position:
Alignm length: 527
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 28

Conread position: 48-577
Cow position:
Alignm length: 539
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 35

Conread position: 49-577
Cow position:
Alignm length: 553
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 51

Conread position: 50-562
Cow position:
Alignm length: 528
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 34

Conread position: 50-562
Cow position:
Alignm length: 534
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 34

Conread position: 50-577
Cow position:
Alignm length: 560
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 39

Conread position: 54-562
Cow position:
Alignm length: 543
Alignm identity: 359
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 46, 70

Conread position: 54-577
Cow position:
Alignm length: 549
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 100

Conread position: 56-248
Cow position:
Alignm length: 198
Alignm identity: 155
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 159, 38

Conread position: 56-476
Cow position:
Alignm length: 442
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 44

Conread position: 56-545
Cow position:
Alignm length: 508
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 44

Conread position: 56-562
Cow position:
Alignm length: 521
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 46

Conread position: 56-562
Cow position:
Alignm length: 528
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 37

Conread position: 56-574
Cow position:
Alignm length: 540
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 44

Conread position: 56-574
Cow position:
Alignm length: 535
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 46

Conread position: 56-577
Cow position:
Alignm length: 547
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 44

Conread position: 62-562
Cow position:
Alignm length: 526
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 38

Conread position: 68-571
Cow position:
Alignm length: 528
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 112

Conread position: 74-444
Cow position:
Alignm length: 393
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 26

Conread position: 78-554
Cow position:
Alignm length: 491
Alignm identity: 304
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 140, 22

Conread position: 83-574
Cow position:
Alignm length: 512
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 17

Conread position: 84-574
Cow position:
Alignm length: 512
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 16

Conread position: 100-562
Cow position:
Alignm length: 483
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 68

Conread position: 125-574
Cow position:
Alignm length: 471
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 54

Conread position: 144-577
Cow position:
Alignm length: 452
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 5

Conread position: 154-575
Cow position:
Alignm length: 431
Alignm identity: 273
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 41, 29

Conread position: 224-545
Cow position:
Alignm length: 323
Alignm identity: 225
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 144, 29

Conread position: 236-575
Cow position:
Alignm length: 345
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 66

Conread position: 238-577
Cow position:
Alignm length: 342
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 15

Conread position: 244-535
Cow position:
Alignm length: 292
Alignm identity: 196
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 244-574
Cow position:
Alignm length: 332
Alignm identity: 230
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 130, 108

Conread position: 247-560
Cow position:
Alignm length: 316
Alignm identity: 213
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 104, 64

Conread position: 247-574
Cow position:
Alignm length: 333
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 105

Conread position: 247-574
Cow position:
Alignm length: 330
Alignm identity: 234
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 168, 27

Conread position: 249-491
Cow position:
Alignm length: 245
Alignm identity: 167
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 118, 15

Conread position: 249-574
Cow position:
Alignm length: 328
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 103

Conread position: 249-577
Cow position:
Alignm length: 330
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 103

Conread position: 259-545
Cow position:
Alignm length: 292
Alignm identity: 198
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 17, 34

Conread position: 259-562
Cow position:
Alignm length: 305
Alignm identity: 200
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 108, 96

Conread position: 277-561
Cow position:
Alignm length: 287
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 75

Conread position: 278-574
Cow position:
Alignm length: 300
Alignm identity: 213
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 86, 74

Conread position: 288-562
Cow position:
Alignm length: 277
Alignm identity: 183
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 65, 42

Conread position: 288-577
Cow position:
Alignm length: 292
Alignm identity: 197
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 203, 73

Conread position: 306-564
Cow position:
Alignm length: 262
Alignm identity: 176
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 61, 46

Conread position: 312-562
Cow position:
Alignm length: 253
Alignm identity: 185
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 60, 40

Conread position: 316-562
Cow position:
Alignm length: 249
Alignm identity: 174
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 51, 36

Conread position: 363-561
Cow position:
Alignm length: 200
Alignm identity: 141
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 128, 111

Conread position: 366-576
Cow position:
Alignm length: 212
Alignm identity: 152
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 125, 108

Conread position: 371-574
Cow position:
Alignm length: 204
Alignm identity: 145
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 5, 0

Conread position: 371-577
Cow position:
Alignm length: 209
Alignm identity: 153
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 67, 40

Show alignments to all cow chromosomes.