Cow genome map
| Conread name: | rret28_b20.y1 |
| Conread position: | 1-322 |
| Cow position: | chr9:30435891-30436217 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 42, 98 |
| Conread position: | 1-562 |
| Cow position: | chr9:31808893-31809475 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 107 |
| Conread position: | 1-572 |
| Cow position: | chr9:44819451-44820037 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 111 |
| Conread position: | 1-574 |
| Cow position: | chr9:17901254-17900669 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 1-575 |
| Cow position: | chr9:22436276-22436864 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 81 |
| Conread position: | 33-574 |
| Cow position: | chr9:45874867-45875422 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 73 |
| Conread position: | 49-577 |
| Cow position: | chr9:9328631-9328094 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 361 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 67 |
| Conread position: | 50-554 |
| Cow position: | chr9:17304600-17304086 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 34 |
| Conread position: | 50-562 |
| Cow position: | chr9:129822-129298 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 50-562 |
| Cow position: | chr9:34724882-34725396 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 336 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 150, 20 |
| Conread position: | 50-562 |
| Cow position: | chr9:51180804-51180282 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 50-562 |
| Cow position: | chr9:52292764-52293268 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 50-574 |
| Cow position: | chr9:779444-778914 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 7 |
| Conread position: | 56-563 |
| Cow position: | chr9:8781530-8781029 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 44 |
| Conread position: | 56-574 |
| Cow position: | chr9:1250618-1250089 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 37 |
| Conread position: | 56-574 |
| Cow position: | chr9:3309993-3310523 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 44 |
| Conread position: | 56-574 |
| Cow position: | chr9:4942429-4941893 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr9:17063005-17062479 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 44 |
| Conread position: | 56-574 |
| Cow position: | chr9:21410686-21411215 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 46 |
| Conread position: | 56-574 |
| Cow position: | chr9:64015291-64014763 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 44 |
| Conread position: | 56-576 |
| Cow position: | chr9:4307983-4307447 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 47 |
| Conread position: | 57-577 |
| Cow position: | chr9:20176330-20175800 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 37 |
| Conread position: | 58-577 |
| Cow position: | chr9:3936075-3935575 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 41 |
| Conread position: | 58-577 |
| Cow position: | chr9:35594702-35594179 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 124 |
| Conread position: | 78-577 |
| Cow position: | chr9:53528888-53529391 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 22 |
| Conread position: | 82-574 |
| Cow position: | chr9:1074771-1074265 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 18 |
| Conread position: | 84-557 |
| Cow position: | chr9:46041840-46041368 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 15 |
| Conread position: | 84-562 |
| Cow position: | chr9:18508419-18507935 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 18 |
| Conread position: | 89-577 |
| Cow position: | chr9:30190907-30190388 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 355 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 83, 28 |
| Conread position: | 99-574 |
| Cow position: | chr9:56303031-56302538 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 83 |
| Conread position: | 101-575 |
| Cow position: | chr9:59509738-59509260 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 76 |
| Conread position: | 115-562 |
| Cow position: | chr9:29026486-29026033 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 64 |
| Conread position: | 119-545 |
| Cow position: | chr9:43665107-43665534 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 11, 62 |
| Conread position: | 188-560 |
| Cow position: | chr9:22434122-22434496 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 21, 176 |
| Conread position: | 194-577 |
| Cow position: | chr9:33951658-33951291 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 61, 167 |
| Conread position: | 235-574 |
| Cow position: | chr9:10938303-10938634 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 53 |
| Conread position: | 238-562 |
| Cow position: | chr9:29626849-29626531 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 51 |
| Conread position: | 238-562 |
| Cow position: | chr9:32970642-32970956 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 14, 79 |
| Conread position: | 238-574 |
| Cow position: | chr9:42311268-42311601 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 115 |
| Conread position: | 238-577 |
| Cow position: | chr9:37066439-37066771 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 31 |
| Conread position: | 247-562 |
| Cow position: | chr9:2679859-2680175 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 108 |
| Conread position: | 247-574 |
| Cow position: | chr9:203707-203384 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 105 |
| Conread position: | 255-577 |
| Cow position: | chr9:29333176-29333496 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 112, 58 |
| Conread position: | 255-577 |
| Cow position: | chr9:60325583-60325261 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 8, 98 |
| Conread position: | 287-577 |
| Cow position: | chr9:8142131-8142420 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 80, 65 |
| Conread position: | 346-526 |
| Cow position: | chr9:55316604-55316427 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 95 |
| Conread position: | 367-574 |
| Cow position: | chr9:22321002-22320795 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 65, 111 |
| Conread position: | 376-574 |
| Cow position: | chr9:15670142-15669946 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 100 |
| Conread position: | 389-577 |
| Cow position: | chr9:55798376-55798192 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 398-558 |
| Cow position: | chr9:44520970-44520814 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.