Cow genome map

Conread name: rret28_b20.y1

Conread position: 1-272
Cow position: chrX:20695609-20695332 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 194
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 57, 46

Conread position: 1-562
Cow position: chrX:7753124-7753704 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 96

Conread position: 1-571
Cow position: chrX:38692044-38692631 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 373
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 12, 97

Conread position: 1-574
Cow position: chrX:41849996-41849412 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 178

Conread position: 24-477
Cow position: chrX:12668501-12668023 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 200

Conread position: 49-576
Cow position: chrX:2144246-2144786 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 96

Conread position: 49-577
Cow position: chrX:35385930-35385423 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 36

Conread position: 50-557
Cow position: chrX:14460791-14461305 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 12

Conread position: 50-561
Cow position: chrX:23278305-23278827 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 34

Conread position: 50-562
Cow position: chrX:17477147-17476615 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 52

Conread position: 50-574
Cow position: chrX:321747-322279 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 34

Conread position: 50-574
Cow position: chrX:2815202-2814667 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 7

Conread position: 50-574
Cow position: chrX:2858096-2857561 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 7

Conread position: 50-574
Cow position: chrX:3419929-3419408 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 19

Conread position: 50-574
Cow position: chrX:16780558-16781098 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 54

Conread position: 50-574
Cow position: chrX:18220706-18221234 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 19

Conread position: 50-574
Cow position: chrX:20798582-20799127 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 51

Conread position: 51-349
Cow position: chrX:5367867-5367559 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 215
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 33

Conread position: 51-562
Cow position: chrX:5322446-5321923 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 49

Conread position: 54-564
Cow position: chrX:29949313-29948810 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 20

Conread position: 54-574
Cow position: chrX:21791899-21792432 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 14

Conread position: 56-245
Cow position: chrX:31510904-31511092 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 159, 66

Conread position: 56-477
Cow position: chrX:37957769-37957331 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 44

Conread position: 56-511
Cow position: chrX:20333275-20332806 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 44

Conread position: 56-516
Cow position: chrX:27425036-27424563 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 44

Conread position: 56-533
Cow position: chrX:24766030-24765560 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 302
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 115, 45

Conread position: 56-545
Cow position: chrX:30170564-30170070 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 44

Conread position: 56-561
Cow position: chrX:28757358-28756834 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 44

Conread position: 56-562
Cow position: chrX:15979671-15979145 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 44

Conread position: 56-562
Cow position: chrX:21580771-21581291 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 46

Conread position: 56-562
Cow position: chrX:37813438-37813951 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 43

Conread position: 56-571
Cow position: chrX:23454733-23454205 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 46

Conread position: 56-574
Cow position: chrX:2577710-2578239 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 44

Conread position: 56-574
Cow position: chrX:5393561-5393030 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 44

Conread position: 56-574
Cow position: chrX:11463761-11463230 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 44

Conread position: 56-574
Cow position: chrX:16684550-16684019 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 44

Conread position: 56-574
Cow position: chrX:17666508-17665982 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 44

Conread position: 56-574
Cow position: chrX:18658522-18657991 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 44

Conread position: 56-574
Cow position: chrX:26398840-26398309 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 44

Conread position: 56-574
Cow position: chrX:29096040-29095509 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 44

Conread position: 56-574
Cow position: chrX:37850417-37850956 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 44

Conread position: 57-562
Cow position: chrX:5356538-5356019 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 45

Conread position: 57-562
Cow position: chrX:24771575-24771055 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 43

Conread position: 57-575
Cow position: chrX:28867959-28867427 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 224

Conread position: 58-248
Cow position: chrX:10414853-10414665 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 144
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 43, 117

Conread position: 59-563
Cow position: chrX:23328515-23328004 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 349
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 157, 33

Conread position: 63-574
Cow position: chrX:35531148-35531672 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 37

Conread position: 70-574
Cow position: chrX:673908-673390 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 31

Conread position: 70-574
Cow position: chrX:2561561-2561039 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 31

Conread position: 83-266
Cow position: chrX:13181253-13181058 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 85-562
Cow position: chrX:21224787-21225276 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 17

Conread position: 93-521
Cow position: chrX:20184569-20184991 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 284
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 79, 24

Conread position: 94-577
Cow position: chrX:25430030-25429550 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 305
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 99

Conread position: 96-577
Cow position: chrX:41887669-41887171 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 7

Conread position: 108-542
Cow position: chrX:7307040-7307472 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 283
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 107, 69

Conread position: 117-577
Cow position: chrX:36072396-36071933 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 320
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 99, 65

Conread position: 120-561
Cow position: chrX:10530440-10529987 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 249

Conread position: 126-575
Cow position: chrX:2380864-2381319 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 50

Conread position: 182-552
Cow position: chrX:31376776-31377141 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 253
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 37, 17

Conread position: 228-577
Cow position: chrX:33536046-33536390 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 15

Conread position: 235-574
Cow position: chrX:20724447-20724783 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 118

Conread position: 238-577
Cow position: chrX:31511108-31511438 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 89

Conread position: 239-577
Cow position: chrX:47395760-47395429 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 230
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 129, 71

Conread position: 240-577
Cow position: chrX:19229530-19229200 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 235
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 45, 19

Conread position: 244-576
Cow position: chrX:4743520-4743195 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 14

Conread position: 246-562
Cow position: chrX:13088060-13087759 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 209
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 134, 7

Conread position: 247-540
Cow position: chrX:21507674-21507385 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 105

Conread position: 247-574
Cow position: chrX:8480939-8481265 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 96

Conread position: 247-574
Cow position: chrX:15262129-15261799 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 105

Conread position: 247-574
Cow position: chrX:30168584-30168259 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 16

Conread position: 253-577
Cow position: chrX:13181045-13180727 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 98

Conread position: 254-577
Cow position: chrX:20695322-20695004 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 222
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 103, 0

Conread position: 265-562
Cow position: chrX:24614139-24613853 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 197
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 52, 77

Conread position: 266-577
Cow position: chrX:10414622-10414321 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 21

Conread position: 269-556
Cow position: chrX:29946584-29946862 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 196
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 16, 23

Conread position: 270-554
Cow position: chrX:17067623-17067342 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 191
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 101, 89

Conread position: 272-562
Cow position: chrX:21780021-21780302 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 191
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 83, 22

Conread position: 272-577
Cow position: chrX:33698144-33697852 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 198
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 283-562
Cow position: chrX:20760369-20760097 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 10, 57

Conread position: 316-574
Cow position: chrX:34094271-34094017 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 186
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 48, 36

Conread position: 317-561
Cow position: chrX:16810327-16810087 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 47, 35

Conread position: 317-574
Cow position: chrX:13930169-13929917 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 47, 35

Conread position: 321-574
Cow position: chrX:27123972-27124221 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 43, 31

Conread position: 345-571
Cow position: chrX:34007374-34007596 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 153
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 24, 14

Conread position: 356-577
Cow position: chrX:35026608-35026821 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 11, 56

Conread position: 372-540
Cow position: chrX:4445065-4445227 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 63, 0

Conread position: 379-575
Cow position: chrX:25321958-25321773 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 112, 42

Conread position: 381-560
Cow position: chrX:26342654-26342481 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 110, 19

Conread position: 393-577
Cow position: chrX:42547301-42547121 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 32, 81

Show alignments to all cow chromosomes.