Cow genome map
Conread name: | rret28_b20.y1 |
Conread position: | 1-272 |
Cow position: | chrX:20695609-20695332 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 194 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 57, 46 |
Conread position: | 1-562 |
Cow position: | chrX:7753124-7753704 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 96 |
Conread position: | 1-571 |
Cow position: | chrX:38692044-38692631 (view UCSC Genome Browser custom track) |
Alignm length: | 599 |
Alignm identity: | 373 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 12, 97 |
Conread position: | 1-574 |
Cow position: | chrX:41849996-41849412 (view UCSC Genome Browser custom track) |
Alignm length: | 598 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 178 |
Conread position: | 24-477 |
Cow position: | chrX:12668501-12668023 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 200 |
Conread position: | 49-576 |
Cow position: | chrX:2144246-2144786 (view UCSC Genome Browser custom track) |
Alignm length: | 553 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 96 |
Conread position: | 49-577 |
Cow position: | chrX:35385930-35385423 (view UCSC Genome Browser custom track) |
Alignm length: | 536 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 36 |
Conread position: | 50-557 |
Cow position: | chrX:14460791-14461305 (view UCSC Genome Browser custom track) |
Alignm length: | 528 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 12 |
Conread position: | 50-561 |
Cow position: | chrX:23278305-23278827 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 34 |
Conread position: | 50-562 |
Cow position: | chrX:17477147-17476615 (view UCSC Genome Browser custom track) |
Alignm length: | 539 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 52 |
Conread position: | 50-574 |
Cow position: | chrX:321747-322279 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 34 |
Conread position: | 50-574 |
Cow position: | chrX:2815202-2814667 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 7 |
Conread position: | 50-574 |
Cow position: | chrX:2858096-2857561 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 7 |
Conread position: | 50-574 |
Cow position: | chrX:3419929-3419408 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 165, 19 |
Conread position: | 50-574 |
Cow position: | chrX:16780558-16781098 (view UCSC Genome Browser custom track) |
Alignm length: | 549 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 54 |
Conread position: | 50-574 |
Cow position: | chrX:18220706-18221234 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 19 |
Conread position: | 50-574 |
Cow position: | chrX:20798582-20799127 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 51 |
Conread position: | 51-349 |
Cow position: | chrX:5367867-5367559 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 215 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 18, 33 |
Conread position: | 51-562 |
Cow position: | chrX:5322446-5321923 (view UCSC Genome Browser custom track) |
Alignm length: | 532 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 49 |
Conread position: | 54-564 |
Cow position: | chrX:29949313-29948810 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 20 |
Conread position: | 54-574 |
Cow position: | chrX:21791899-21792432 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 139, 14 |
Conread position: | 56-245 |
Cow position: | chrX:31510904-31511092 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 151 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 159, 66 |
Conread position: | 56-477 |
Cow position: | chrX:37957769-37957331 (view UCSC Genome Browser custom track) |
Alignm length: | 442 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 44 |
Conread position: | 56-511 |
Cow position: | chrX:20333275-20332806 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 44 |
Conread position: | 56-516 |
Cow position: | chrX:27425036-27424563 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 44 |
Conread position: | 56-533 |
Cow position: | chrX:24766030-24765560 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 302 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 115, 45 |
Conread position: | 56-545 |
Cow position: | chrX:30170564-30170070 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 44 |
Conread position: | 56-561 |
Cow position: | chrX:28757358-28756834 (view UCSC Genome Browser custom track) |
Alignm length: | 533 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 44 |
Conread position: | 56-562 |
Cow position: | chrX:15979671-15979145 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 44 |
Conread position: | 56-562 |
Cow position: | chrX:21580771-21581291 (view UCSC Genome Browser custom track) |
Alignm length: | 529 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 46 |
Conread position: | 56-562 |
Cow position: | chrX:37813438-37813951 (view UCSC Genome Browser custom track) |
Alignm length: | 525 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 43 |
Conread position: | 56-571 |
Cow position: | chrX:23454733-23454205 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 46 |
Conread position: | 56-574 |
Cow position: | chrX:2577710-2578239 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 44 |
Conread position: | 56-574 |
Cow position: | chrX:5393561-5393030 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 44 |
Conread position: | 56-574 |
Cow position: | chrX:11463761-11463230 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 44 |
Conread position: | 56-574 |
Cow position: | chrX:16684550-16684019 (view UCSC Genome Browser custom track) |
Alignm length: | 539 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 44 |
Conread position: | 56-574 |
Cow position: | chrX:17666508-17665982 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 44 |
Conread position: | 56-574 |
Cow position: | chrX:18658522-18657991 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 44 |
Conread position: | 56-574 |
Cow position: | chrX:26398840-26398309 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 44 |
Conread position: | 56-574 |
Cow position: | chrX:29096040-29095509 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 44 |
Conread position: | 56-574 |
Cow position: | chrX:37850417-37850956 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 44 |
Conread position: | 57-562 |
Cow position: | chrX:5356538-5356019 (view UCSC Genome Browser custom track) |
Alignm length: | 529 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 45 |
Conread position: | 57-562 |
Cow position: | chrX:24771575-24771055 (view UCSC Genome Browser custom track) |
Alignm length: | 530 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 142, 43 |
Conread position: | 57-575 |
Cow position: | chrX:28867959-28867427 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 224 |
Conread position: | 58-248 |
Cow position: | chrX:10414853-10414665 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 144 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 43, 117 |
Conread position: | 59-563 |
Cow position: | chrX:23328515-23328004 (view UCSC Genome Browser custom track) |
Alignm length: | 530 |
Alignm identity: | 349 |
Alignm E-value: | 7.00005e-41 |
Alignm gaps (pig, cow): | 157, 33 |
Conread position: | 63-574 |
Cow position: | chrX:35531148-35531672 (view UCSC Genome Browser custom track) |
Alignm length: | 532 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 37 |
Conread position: | 70-574 |
Cow position: | chrX:673908-673390 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 31 |
Conread position: | 70-574 |
Cow position: | chrX:2561561-2561039 (view UCSC Genome Browser custom track) |
Alignm length: | 531 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 31 |
Conread position: | 83-266 |
Cow position: | chrX:13181253-13181058 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 143 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 85-562 |
Cow position: | chrX:21224787-21225276 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 17 |
Conread position: | 93-521 |
Cow position: | chrX:20184569-20184991 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 284 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 79, 24 |
Conread position: | 94-577 |
Cow position: | chrX:25430030-25429550 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 305 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 20, 99 |
Conread position: | 96-577 |
Cow position: | chrX:41887669-41887171 (view UCSC Genome Browser custom track) |
Alignm length: | 511 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 7 |
Conread position: | 108-542 |
Cow position: | chrX:7307040-7307472 (view UCSC Genome Browser custom track) |
Alignm length: | 447 |
Alignm identity: | 283 |
Alignm E-value: | 7e-30 |
Alignm gaps (pig, cow): | 107, 69 |
Conread position: | 117-577 |
Cow position: | chrX:36072396-36071933 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 320 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 99, 65 |
Conread position: | 120-561 |
Cow position: | chrX:10530440-10529987 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 249 |
Conread position: | 126-575 |
Cow position: | chrX:2380864-2381319 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 50 |
Conread position: | 182-552 |
Cow position: | chrX:31376776-31377141 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 253 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 37, 17 |
Conread position: | 228-577 |
Cow position: | chrX:33536046-33536390 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 139, 15 |
Conread position: | 235-574 |
Cow position: | chrX:20724447-20724783 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 118 |
Conread position: | 238-577 |
Cow position: | chrX:31511108-31511438 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 89 |
Conread position: | 239-577 |
Cow position: | chrX:47395760-47395429 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 230 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 129, 71 |
Conread position: | 240-577 |
Cow position: | chrX:19229530-19229200 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 235 |
Alignm E-value: | 6e-39 |
Alignm gaps (pig, cow): | 45, 19 |
Conread position: | 244-576 |
Cow position: | chrX:4743520-4743195 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 127, 14 |
Conread position: | 246-562 |
Cow position: | chrX:13088060-13087759 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 209 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 134, 7 |
Conread position: | 247-540 |
Cow position: | chrX:21507674-21507385 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 105 |
Conread position: | 247-574 |
Cow position: | chrX:8480939-8481265 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 96 |
Conread position: | 247-574 |
Cow position: | chrX:15262129-15261799 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 105 |
Conread position: | 247-574 |
Cow position: | chrX:30168584-30168259 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 16 |
Conread position: | 253-577 |
Cow position: | chrX:13181045-13180727 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 98 |
Conread position: | 254-577 |
Cow position: | chrX:20695322-20695004 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 222 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 103, 0 |
Conread position: | 265-562 |
Cow position: | chrX:24614139-24613853 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 197 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 52, 77 |
Conread position: | 266-577 |
Cow position: | chrX:10414622-10414321 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 21 |
Conread position: | 269-556 |
Cow position: | chrX:29946584-29946862 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 196 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 16, 23 |
Conread position: | 270-554 |
Cow position: | chrX:17067623-17067342 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 191 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 101, 89 |
Conread position: | 272-562 |
Cow position: | chrX:21780021-21780302 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 191 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 83, 22 |
Conread position: | 272-577 |
Cow position: | chrX:33698144-33697852 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 198 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 33, 0 |
Conread position: | 283-562 |
Cow position: | chrX:20760369-20760097 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 203 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 10, 57 |
Conread position: | 316-574 |
Cow position: | chrX:34094271-34094017 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 186 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 48, 36 |
Conread position: | 317-561 |
Cow position: | chrX:16810327-16810087 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 172 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 47, 35 |
Conread position: | 317-574 |
Cow position: | chrX:13930169-13929917 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 180 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 47, 35 |
Conread position: | 321-574 |
Cow position: | chrX:27123972-27124221 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 180 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 43, 31 |
Conread position: | 345-571 |
Cow position: | chrX:34007374-34007596 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 153 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 24, 14 |
Conread position: | 356-577 |
Cow position: | chrX:35026608-35026821 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 155 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 11, 56 |
Conread position: | 372-540 |
Cow position: | chrX:4445065-4445227 (view UCSC Genome Browser custom track) |
Alignm length: | 169 |
Alignm identity: | 123 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 63, 0 |
Conread position: | 379-575 |
Cow position: | chrX:25321958-25321773 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 141 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 112, 42 |
Conread position: | 381-560 |
Cow position: | chrX:26342654-26342481 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 128 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 110, 19 |
Conread position: | 393-577 |
Cow position: | chrX:42547301-42547121 (view UCSC Genome Browser custom track) |
Alignm length: | 186 |
Alignm identity: | 139 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 32, 81 |
Show alignments to all cow chromosomes.