Cow genome map
| Conread name: | rret28_l8.y1 |
| Conread position: | 20-511 |
| Cow position: | chr12:11870972-11871475 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 118 |
| Conread position: | 20-630 |
| Cow position: | chr12:6405949-6405307 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 41 |
| Conread position: | 21-349 |
| Cow position: | chr12:1888817-1888482 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 21-422 |
| Cow position: | chr12:21198658-21199075 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 70 |
| Conread position: | 21-476 |
| Cow position: | chr12:14661933-14661457 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 21-645 |
| Cow position: | chr12:32063815-32064432 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 143 |
| Conread position: | 22-556 |
| Cow position: | chr12:36367534-36368076 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 22-583 |
| Cow position: | chr12:43030689-43030102 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 449 |
| Conread position: | 22-616 |
| Cow position: | chr12:25262769-25262154 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 594 |
| Conread position: | 22-651 |
| Cow position: | chr12:21209351-21210016 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 233 |
| Conread position: | 22-651 |
| Cow position: | chr12:21942436-21943089 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 155 |
| Conread position: | 22-651 |
| Cow position: | chr12:37559689-37560365 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 179 |
| Conread position: | 23-529 |
| Cow position: | chr12:36449277-36449787 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 24-263 |
| Cow position: | chr12:28765318-28765073 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 24-494 |
| Cow position: | chr12:32678247-32677761 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 50, 362 |
| Conread position: | 24-616 |
| Cow position: | chr12:600656-600053 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 174 |
| Conread position: | 24-630 |
| Cow position: | chr12:20997396-20996757 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 595 |
| Conread position: | 24-630 |
| Cow position: | chr12:27855265-27854636 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 24-641 |
| Cow position: | chr12:8677400-8676747 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 157 |
| Conread position: | 24-641 |
| Cow position: | chr12:25100356-25099732 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 207 |
| Conread position: | 24-645 |
| Cow position: | chr12:1403194-1403845 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 61 |
| Conread position: | 24-647 |
| Cow position: | chr12:17979436-17980059 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 121 |
| Conread position: | 24-651 |
| Cow position: | chr12:11098937-11099584 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 317 |
| Conread position: | 24-651 |
| Cow position: | chr12:27932205-27931556 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 112 |
| Conread position: | 25-459 |
| Cow position: | chr12:22205042-22204590 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 25-625 |
| Cow position: | chr12:42858835-42858214 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 25-651 |
| Cow position: | chr12:32654244-32654902 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 63 |
| Conread position: | 74-630 |
| Cow position: | chr12:21127911-21128444 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 86 |
| Conread position: | 83-651 |
| Cow position: | chr12:21387483-21386889 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 527 |
| Conread position: | 85-512 |
| Cow position: | chr12:36337552-36337980 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 143 |
| Conread position: | 104-530 |
| Cow position: | chr12:12292755-12293180 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 64, 139 |
| Conread position: | 131-651 |
| Cow position: | chr12:3208781-3209305 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 347 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 164-630 |
| Cow position: | chr12:35345407-35345875 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 15 |
| Conread position: | 169-591 |
| Cow position: | chr12:28004786-28005192 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 296 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 177, 56 |
| Conread position: | 217-592 |
| Cow position: | chr12:23141298-23140905 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 377 |
| Conread position: | 234-643 |
| Cow position: | chr12:23162013-23161592 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 261-577 |
| Cow position: | chr12:1870254-1870579 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 310-651 |
| Cow position: | chr12:48471884-48471529 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 317-630 |
| Cow position: | chr12:1776956-1776638 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 59, 5 |
| Conread position: | 327-630 |
| Cow position: | chr12:33119168-33119494 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 176 |
| Conread position: | 340-648 |
| Cow position: | chr12:24977790-24977467 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 105 |
| Conread position: | 340-651 |
| Cow position: | chr12:3361966-3362294 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 261 |
| Conread position: | 340-651 |
| Cow position: | chr12:21253580-21253259 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 24 |
| Conread position: | 341-632 |
| Cow position: | chr12:5144717-5145008 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 35, 118 |
| Conread position: | 343-558 |
| Cow position: | chr12:36428556-36428769 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 61 |
| Conread position: | 350-650 |
| Cow position: | chr12:21225895-21225586 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 101 |
| Conread position: | 363-611 |
| Cow position: | chr12:35313340-35313089 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 79 |
| Conread position: | 385-651 |
| Cow position: | chr12:31202414-31202135 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 212 |
| Conread position: | 400-651 |
| Cow position: | chr12:22570731-22570475 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 47, 10 |
| Conread position: | 401-629 |
| Cow position: | chr12:29442499-29442731 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 46, 23 |
| Conread position: | 404-630 |
| Cow position: | chr12:11580908-11581136 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 23, 186 |
| Conread position: | 406-651 |
| Cow position: | chr12:1888462-1888210 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 41, 88 |
| Conread position: | 411-651 |
| Cow position: | chr12:20843720-20843964 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 44, 178 |
| Conread position: | 415-647 |
| Cow position: | chr12:21199089-21199337 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 30, 159 |
| Conread position: | 420-617 |
| Cow position: | chr12:42607154-42606951 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 175 |
| Conread position: | 443-649 |
| Cow position: | chr12:15036639-15036434 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 86, 71 |
| Conread position: | 469-650 |
| Cow position: | chr12:21482290-21482471 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 15 |
| Conread position: | 473-651 |
| Cow position: | chr12:14661184-14661001 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 75, 113 |
| Conread position: | 482-651 |
| Cow position: | chr12:19870090-19870251 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 122, 37 |
Show alignments to all cow chromosomes.