Cow genome map
| Conread name: | rret28_l8.y1 |
| Conread position: | 8-651 |
| Cow position: | chr13:57024167-57024822 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 6 |
| Conread position: | 21-336 |
| Cow position: | chr13:33335832-33335515 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 115 |
| Conread position: | 21-338 |
| Cow position: | chr13:30238720-30239037 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 122 |
| Conread position: | 21-530 |
| Cow position: | chr13:32737346-32736821 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 444 |
| Conread position: | 21-641 |
| Cow position: | chr13:15923902-15923256 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 443 |
| Conread position: | 22-170 |
| Cow position: | chr13:31733608-31733455 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 22-320 |
| Cow position: | chr13:30244202-30243899 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 242 |
| Conread position: | 22-546 |
| Cow position: | chr13:60466807-60467347 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 130 |
| Conread position: | 22-558 |
| Cow position: | chr13:16254901-16254349 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 406 |
| Conread position: | 22-568 |
| Cow position: | chr13:42218446-42217866 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 22-616 |
| Cow position: | chr13:2388336-2387713 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 596 |
| Conread position: | 22-651 |
| Cow position: | chr13:6667639-6667004 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 75 |
| Conread position: | 22-651 |
| Cow position: | chr13:17308951-17309604 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 362 |
| Conread position: | 22-651 |
| Cow position: | chr13:21839721-21839060 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 594 |
| Conread position: | 22-651 |
| Cow position: | chr13:32984872-32984215 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 589 |
| Conread position: | 22-651 |
| Cow position: | chr13:47229524-47228864 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 53 |
| Conread position: | 22-651 |
| Cow position: | chr13:49974155-49974799 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 180 |
| Conread position: | 23-647 |
| Cow position: | chr13:34325080-34324429 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 175 |
| Conread position: | 23-650 |
| Cow position: | chr13:15450641-15449999 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 123 |
| Conread position: | 24-298 |
| Cow position: | chr13:23002824-23002537 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 24-488 |
| Cow position: | chr13:34424242-34424724 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 24-616 |
| Cow position: | chr13:43982603-43982017 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 24-623 |
| Cow position: | chr13:1592671-1592059 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 156 |
| Conread position: | 24-630 |
| Cow position: | chr13:34937962-34938551 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 82 |
| Conread position: | 24-641 |
| Cow position: | chr13:15520026-15519402 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 440 |
| Conread position: | 24-641 |
| Cow position: | chr13:32545862-32546515 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 24-651 |
| Cow position: | chr13:3653839-3653184 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 24-651 |
| Cow position: | chr13:4484278-4484925 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 179 |
| Conread position: | 24-651 |
| Cow position: | chr13:4941870-4942514 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 132 |
| Conread position: | 24-651 |
| Cow position: | chr13:9045266-9045896 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 36 |
| Conread position: | 24-651 |
| Cow position: | chr13:30303764-30304423 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 320 |
| Conread position: | 24-651 |
| Cow position: | chr13:31611821-31611180 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 25-630 |
| Cow position: | chr13:13900351-13900975 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 96 |
| Conread position: | 25-651 |
| Cow position: | chr13:14178353-14177715 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 25-651 |
| Cow position: | chr13:25692177-25692808 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 80 |
| Conread position: | 31-651 |
| Cow position: | chr13:34041846-34041210 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 248 |
| Conread position: | 35-651 |
| Cow position: | chr13:31730382-31729764 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 43-651 |
| Cow position: | chr13:31556230-31555607 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 169 |
| Conread position: | 57-651 |
| Cow position: | chr13:15543061-15543670 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 13 |
| Conread position: | 74-615 |
| Cow position: | chr13:6147761-6148316 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 344 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 74, 7 |
| Conread position: | 104-649 |
| Cow position: | chr13:28347685-28347127 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 353 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 104-651 |
| Cow position: | chr13:17331196-17330646 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 21 |
| Conread position: | 106-643 |
| Cow position: | chr13:11798143-11797596 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 175 |
| Conread position: | 113-647 |
| Cow position: | chr13:44653238-44652692 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 360 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 137, 62 |
| Conread position: | 118-651 |
| Cow position: | chr13:35757852-35758415 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 371 |
| Conread position: | 124-617 |
| Cow position: | chr13:12633154-12633643 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 330 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 127, 109 |
| Conread position: | 126-647 |
| Cow position: | chr13:8797199-8796676 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 353 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 122, 49 |
| Conread position: | 130-651 |
| Cow position: | chr13:30654789-30654261 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 330 |
| Conread position: | 131-517 |
| Cow position: | chr13:34154164-34153767 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 17 |
| Conread position: | 131-587 |
| Cow position: | chr13:21696844-21697318 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 157-613 |
| Cow position: | chr13:21602335-21602784 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 299 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 37, 67 |
| Conread position: | 181-650 |
| Cow position: | chr13:38071212-38070751 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 100, 11 |
| Conread position: | 190-651 |
| Cow position: | chr13:31733238-31732760 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 183 |
| Conread position: | 212-641 |
| Cow position: | chr13:14402424-14401979 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 390 |
| Conread position: | 213-651 |
| Cow position: | chr13:43590006-43590457 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 171 |
| Conread position: | 231-617 |
| Cow position: | chr13:42202545-42202147 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 20, 208 |
| Conread position: | 238-651 |
| Cow position: | chr13:13325620-13326062 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 375 |
| Conread position: | 243-445 |
| Cow position: | chr13:47861532-47861745 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 94, 24 |
| Conread position: | 247-632 |
| Cow position: | chr13:57823960-57823571 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 155, 91 |
| Conread position: | 262-642 |
| Cow position: | chr13:31506358-31506741 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 101, 12 |
| Conread position: | 317-643 |
| Cow position: | chr13:5625199-5624868 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 9 |
| Conread position: | 323-641 |
| Cow position: | chr13:23002213-23001885 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 70 |
| Conread position: | 331-647 |
| Cow position: | chr13:21908295-21907979 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 45, 21 |
| Conread position: | 333-651 |
| Cow position: | chr13:11794240-11793934 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 108 |
| Conread position: | 340-645 |
| Cow position: | chr13:30239133-30239445 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 340-651 |
| Cow position: | chr13:678560-678884 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 86 |
| Conread position: | 340-651 |
| Cow position: | chr13:28859985-28860298 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 107, 33 |
| Conread position: | 341-646 |
| Cow position: | chr13:48358455-48358765 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 102 |
| Conread position: | 377-611 |
| Cow position: | chr13:50661155-50661387 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 377-651 |
| Cow position: | chr13:34030469-34030749 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 25, 92 |
| Conread position: | 390-651 |
| Cow position: | chr13:17998418-17998692 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 204 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 12, 207 |
| Conread position: | 418-641 |
| Cow position: | chr13:32924234-32924017 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 123 |
| Conread position: | 443-641 |
| Cow position: | chr13:34342822-34343029 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 455-645 |
| Cow position: | chr13:26845215-26845415 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 472-650 |
| Cow position: | chr13:28670270-28670093 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 59 |
| Conread position: | 472-651 |
| Cow position: | chr13:34909077-34908902 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 114 |
| Conread position: | 478-651 |
| Cow position: | chr13:6358074-6358257 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 116 |
Show alignments to all cow chromosomes.