Cow genome map

Conread name: rret28_l8.y1

Conread position: 12-648
Cow position: chr16:37456019-37455342 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 187

Conread position: 18-516
Cow position: chr16:28471094-28470581 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 486

Conread position: 20-650
Cow position: chr16:25738698-25739301 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 9

Conread position: 21-599
Cow position: chr16:25341968-25342568 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 402

Conread position: 21-647
Cow position: chr16:42736381-42735739 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 46

Conread position: 21-651
Cow position: chr16:14665801-14665153 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 420

Conread position: 22-397
Cow position: chr16:4302327-4301946 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 228
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 186

Conread position: 22-580
Cow position: chr16:41163059-41162481 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 485

Conread position: 22-597
Cow position: chr16:37481115-37480533 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 106

Conread position: 22-630
Cow position: chr16:34530325-34530943 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 337

Conread position: 22-645
Cow position: chr16:1432201-1432848 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 21

Conread position: 22-651
Cow position: chr16:5661856-5662503 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 194

Conread position: 22-651
Cow position: chr16:10375586-10374933 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 100

Conread position: 22-651
Cow position: chr16:21185627-21186283 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 116

Conread position: 22-651
Cow position: chr16:25085632-25086278 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 20

Conread position: 22-651
Cow position: chr16:25188660-25189316 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 405

Conread position: 23-651
Cow position: chr16:28170358-28169686 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 504

Conread position: 24-188
Cow position: chr16:837065-837233 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 50, 39

Conread position: 24-196
Cow position: chr16:15567049-15567226 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 51, 0

Conread position: 24-231
Cow position: chr16:7463685-7463897 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 51, 154

Conread position: 24-315
Cow position: chr16:41166756-41166459 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 24-367
Cow position: chr16:2727273-2726918 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 96

Conread position: 24-445
Cow position: chr16:51405921-51405503 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 80

Conread position: 24-540
Cow position: chr16:29090271-29089747 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 29

Conread position: 24-573
Cow position: chr16:15493517-15494088 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 24-599
Cow position: chr16:43897258-43896663 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 18

Conread position: 24-624
Cow position: chr16:4478968-4478336 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 594

Conread position: 24-625
Cow position: chr16:26663764-26664389 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 476

Conread position: 24-630
Cow position: chr16:407019-406399 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 156

Conread position: 24-630
Cow position: chr16:5484750-5485367 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 18

Conread position: 24-630
Cow position: chr16:16271125-16270492 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 105

Conread position: 24-630
Cow position: chr16:29047037-29047663 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 156

Conread position: 24-630
Cow position: chr16:31591905-31591276 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 411

Conread position: 24-641
Cow position: chr16:7676438-7675795 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 20

Conread position: 24-641
Cow position: chr16:8816090-8815447 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 60

Conread position: 24-641
Cow position: chr16:15476856-15477497 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 508

Conread position: 24-641
Cow position: chr16:23535875-23535232 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 24-641
Cow position: chr16:23983324-23983954 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 79

Conread position: 24-645
Cow position: chr16:1567438-1566794 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 449

Conread position: 24-645
Cow position: chr16:2410952-2410310 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 417

Conread position: 24-645
Cow position: chr16:40296162-40295507 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 242

Conread position: 24-648
Cow position: chr16:18498276-18497658 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 197

Conread position: 24-651
Cow position: chr16:2483125-2482473 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 283

Conread position: 24-651
Cow position: chr16:10438251-10438919 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 24-651
Cow position: chr16:12537910-12537289 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 155

Conread position: 24-651
Cow position: chr16:15185086-15185738 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 24-651
Cow position: chr16:23252420-23251765 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 24-651
Cow position: chr16:25441641-25442291 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 443

Conread position: 24-651
Cow position: chr16:25457449-25456817 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 388

Conread position: 25-367
Cow position: chr16:27733776-27733428 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 153

Conread position: 25-630
Cow position: chr16:29034066-29034688 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 158

Conread position: 31-651
Cow position: chr16:49256197-49255563 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 407

Conread position: 32-234
Cow position: chr16:23808462-23808662 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 75, 11

Conread position: 32-648
Cow position: chr16:9208995-9209618 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 306

Conread position: 36-648
Cow position: chr16:12668735-12668124 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 111

Conread position: 44-645
Cow position: chr16:25171383-25171999 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 417

Conread position: 51-342
Cow position: chr16:25257986-25258290 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 62-651
Cow position: chr16:23670750-23671364 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 25

Conread position: 86-598
Cow position: chr16:23802035-23801502 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 47

Conread position: 91-599
Cow position: chr16:1860308-1860820 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 209

Conread position: 122-617
Cow position: chr16:337286-337797 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 15

Conread position: 124-651
Cow position: chr16:27593625-27594162 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 479

Conread position: 127-523
Cow position: chr16:19151496-19151086 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 46

Conread position: 148-651
Cow position: chr16:56916923-56916404 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 229

Conread position: 163-651
Cow position: chr16:3089045-3088537 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 297

Conread position: 167-642
Cow position: chr16:26978300-26978777 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 313

Conread position: 175-590
Cow position: chr16:41755288-41754866 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 143

Conread position: 175-651
Cow position: chr16:26105891-26105383 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 21

Conread position: 177-583
Cow position: chr16:6716416-6715995 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 286
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 74, 85

Conread position: 177-651
Cow position: chr16:837483-837973 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 290

Conread position: 195-645
Cow position: chr16:15567444-15567913 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 391

Conread position: 228-465
Cow position: chr16:9931071-9931311 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 80

Conread position: 231-523
Cow position: chr16:7464053-7464359 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 238-630
Cow position: chr16:49234398-49233995 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 241

Conread position: 270-583
Cow position: chr16:11110774-11110452 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 218
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 39, 31

Conread position: 275-651
Cow position: chr16:3330207-3330603 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 326

Conread position: 318-546
Cow position: chr16:41762163-41762391 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 58, 20

Conread position: 322-650
Cow position: chr16:49221553-49221229 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 97

Conread position: 328-647
Cow position: chr16:23808661-23808983 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 119

Conread position: 330-651
Cow position: chr16:51084484-51084819 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 47, 308

Conread position: 339-645
Cow position: chr16:17056629-17056321 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 219
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 45, 120

Conread position: 340-651
Cow position: chr16:11283935-11284260 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 258

Conread position: 340-651
Cow position: chr16:20202343-20202653 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 81

Conread position: 340-651
Cow position: chr16:28196899-28196577 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 228
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 30, 53

Conread position: 342-651
Cow position: chr16:41166300-41165989 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 76

Conread position: 343-651
Cow position: chr16:16897803-16898119 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 94

Conread position: 345-644
Cow position: chr16:19638409-19638712 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 211
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 11, 16

Conread position: 363-651
Cow position: chr16:29984455-29984740 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 38

Conread position: 374-599
Cow position: chr16:2726851-2726618 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 182
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 28, 218

Conread position: 374-641
Cow position: chr16:2238382-2238110 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 28, 176

Conread position: 384-641
Cow position: chr16:27732992-27732728 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 18, 247

Conread position: 394-651
Cow position: chr16:5890396-5890660 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 133

Conread position: 399-629
Cow position: chr16:25001893-25001657 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 180
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 56, 16

Conread position: 400-651
Cow position: chr16:20331189-20331458 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 47, 15

Conread position: 401-651
Cow position: chr16:54324928-54324676 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 186

Conread position: 403-546
Cow position: chr16:32936723-32936866 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 44, 91

Conread position: 403-648
Cow position: chr16:47474666-47474916 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 179
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 46, 204

Conread position: 417-651
Cow position: chr16:19779228-19778984 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 51

Conread position: 450-617
Cow position: chr16:49168642-49168477 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 88, 30

Conread position: 456-630
Cow position: chr16:48334107-48333928 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 36

Conread position: 468-651
Cow position: chr16:25258299-25258486 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 5, 117

Conread position: 472-651
Cow position: chr16:3918544-3918733 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 59, 128

Conread position: 472-651
Cow position: chr16:28470595-28470410 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 72, 0

Conread position: 476-651
Cow position: chr16:33011-33196 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 495-651
Cow position: chr16:19080468-19080634 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 99

Show alignments to all cow chromosomes.