Cow genome map
| Conread name: | rret28_l8.y1 |
| Conread position: | 21-645 |
| Cow position: | chr17:19020157-19020805 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 12 |
| Conread position: | 22-343 |
| Cow position: | chr17:8209692-8210022 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 22-372 |
| Cow position: | chr17:181883-182245 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 301 |
| Conread position: | 22-536 |
| Cow position: | chr17:1880682-1881216 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 233 |
| Conread position: | 22-617 |
| Cow position: | chr17:23323869-23323252 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 449 |
| Conread position: | 22-630 |
| Cow position: | chr17:6120296-6120921 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 491 |
| Conread position: | 22-651 |
| Cow position: | chr17:3655710-3655054 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 200 |
| Conread position: | 22-651 |
| Cow position: | chr17:4082623-4083262 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 100 |
| Conread position: | 22-651 |
| Cow position: | chr17:5227206-5227856 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 22-651 |
| Cow position: | chr17:11783429-11784084 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 198 |
| Conread position: | 22-651 |
| Cow position: | chr17:15436376-15437022 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 167 |
| Conread position: | 22-651 |
| Cow position: | chr17:20099893-20099234 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 387 |
| Conread position: | 22-651 |
| Cow position: | chr17:24782744-24783400 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 56 |
| Conread position: | 22-651 |
| Cow position: | chr17:31767457-31766807 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 592 |
| Conread position: | 22-651 |
| Cow position: | chr17:34156702-34157360 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 22-651 |
| Cow position: | chr17:43989085-43989742 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 433 |
| Conread position: | 23-651 |
| Cow position: | chr17:14040448-14039806 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 23-651 |
| Cow position: | chr17:14216448-14215788 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 160 |
| Conread position: | 24-188 |
| Cow position: | chr17:28018975-28019144 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 24-499 |
| Cow position: | chr17:20488533-20489020 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 24-583 |
| Cow position: | chr17:250748-251310 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 301 |
| Conread position: | 24-598 |
| Cow position: | chr17:40805399-40805983 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 18 |
| Conread position: | 24-624 |
| Cow position: | chr17:19268243-19267616 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 584 |
| Conread position: | 24-625 |
| Cow position: | chr17:2580209-2580833 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 24-630 |
| Cow position: | chr17:11087136-11086511 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 442 |
| Conread position: | 24-648 |
| Cow position: | chr17:1657262-1656616 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 108 |
| Conread position: | 24-648 |
| Cow position: | chr17:4942143-4941492 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 105 |
| Conread position: | 24-650 |
| Cow position: | chr17:2030707-2031341 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 447 |
| Conread position: | 24-651 |
| Cow position: | chr17:3708189-3707546 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 51 |
| Conread position: | 24-651 |
| Cow position: | chr17:6069143-6069784 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 24-651 |
| Cow position: | chr17:6260436-6261095 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 521 |
| Conread position: | 24-651 |
| Cow position: | chr17:15851278-15851927 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 179 |
| Conread position: | 24-651 |
| Cow position: | chr17:16856932-16856278 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 24-651 |
| Cow position: | chr17:20087164-20086527 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 156 |
| Conread position: | 24-651 |
| Cow position: | chr17:24029418-24028765 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 460 |
| Conread position: | 25-406 |
| Cow position: | chr17:3642245-3641849 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 154 |
| Conread position: | 25-641 |
| Cow position: | chr17:15324416-15325063 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 407 |
| Conread position: | 25-647 |
| Cow position: | chr17:2262691-2263338 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 363 |
| Conread position: | 26-278 |
| Cow position: | chr17:18103099-18102844 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 26-545 |
| Cow position: | chr17:14894749-14895296 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 231 |
| Conread position: | 28-651 |
| Cow position: | chr17:15142768-15142116 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 163 |
| Conread position: | 30-197 |
| Cow position: | chr17:2174435-2174604 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 31-372 |
| Cow position: | chr17:38874222-38874579 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 31-647 |
| Cow position: | chr17:20081270-20080643 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 31-650 |
| Cow position: | chr17:22558581-22559200 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 33-615 |
| Cow position: | chr17:20403019-20403625 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 76-561 |
| Cow position: | chr17:31532867-31533345 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 82-640 |
| Cow position: | chr17:54808-54222 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 202 |
| Conread position: | 85-651 |
| Cow position: | chr17:36548-37122 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 64 |
| Conread position: | 91-641 |
| Cow position: | chr17:4060757-4061333 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 60 |
| Conread position: | 93-650 |
| Cow position: | chr17:14240158-14240738 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 556 |
| Conread position: | 107-546 |
| Cow position: | chr17:1704018-1703571 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 89 |
| Conread position: | 107-626 |
| Cow position: | chr17:151224-150674 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 384 |
| Conread position: | 118-651 |
| Cow position: | chr17:9080725-9080182 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 140 |
| Conread position: | 123-650 |
| Cow position: | chr17:16121830-16121328 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 33 |
| Conread position: | 133-630 |
| Cow position: | chr17:8202671-8203162 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 143-625 |
| Cow position: | chr17:12978477-12978002 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 309 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 162-649 |
| Cow position: | chr17:239072-239560 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 249 |
| Conread position: | 163-651 |
| Cow position: | chr17:6611759-6611248 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 444 |
| Conread position: | 168-651 |
| Cow position: | chr17:15371960-15372465 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 198 |
| Conread position: | 229-641 |
| Cow position: | chr17:2174607-2175025 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 247 |
| Conread position: | 232-602 |
| Cow position: | chr17:22132999-22133380 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 69 |
| Conread position: | 256-651 |
| Cow position: | chr17:21418404-21418804 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 195 |
| Conread position: | 284-639 |
| Cow position: | chr17:4784000-4783633 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 291-651 |
| Cow position: | chr17:2078141-2077757 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 215 |
| Conread position: | 322-651 |
| Cow position: | chr17:39049114-39049453 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 125, 91 |
| Conread position: | 340-651 |
| Cow position: | chr17:2149347-2149674 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 340-651 |
| Cow position: | chr17:20390172-20389847 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 374-651 |
| Cow position: | chr17:182525-182814 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 193 |
| Conread position: | 385-651 |
| Cow position: | chr17:33284873-33284602 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 206 |
| Conread position: | 395-630 |
| Cow position: | chr17:13675317-13675072 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 21, 209 |
| Conread position: | 398-648 |
| Cow position: | chr17:42266392-42266640 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 399-651 |
| Cow position: | chr17:27793801-27793539 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 11 |
| Conread position: | 413-650 |
| Cow position: | chr17:39048985-39049231 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 415-599 |
| Cow position: | chr17:12669431-12669246 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 443-651 |
| Cow position: | chr17:21769987-21769768 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 23 |
| Conread position: | 451-651 |
| Cow position: | chr17:13705820-13706025 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 146, 12 |
| Conread position: | 461-651 |
| Cow position: | chr17:23038620-23038811 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 139, 23 |
| Conread position: | 472-643 |
| Cow position: | chr17:4208450-4208616 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 111, 39 |
Show alignments to all cow chromosomes.