Cow genome map
| Conread name: | rret28_l8.y1 |
| Conread position: | 20-645 |
| Cow position: | chr18:36256106-36255487 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 132 |
| Conread position: | 21-542 |
| Cow position: | chr18:51275244-51274719 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 121 |
| Conread position: | 21-650 |
| Cow position: | chr18:29073793-29074426 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 138 |
| Conread position: | 22-333 |
| Cow position: | chr18:33750806-33751120 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 22-400 |
| Cow position: | chr18:33952787-33952395 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 155 |
| Conread position: | 22-626 |
| Cow position: | chr18:51661135-51661758 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 22-650 |
| Cow position: | chr18:51342479-51343134 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 121 |
| Conread position: | 22-651 |
| Cow position: | chr18:11274313-11273669 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 254 |
| Conread position: | 22-651 |
| Cow position: | chr18:16079464-16080121 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 590 |
| Conread position: | 22-651 |
| Cow position: | chr18:19353164-19353813 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 85 |
| Conread position: | 24-313 |
| Cow position: | chr18:25351551-25351846 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 24-358 |
| Cow position: | chr18:33269620-33269955 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 129 |
| Conread position: | 24-445 |
| Cow position: | chr18:32653012-32653451 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 24-496 |
| Cow position: | chr18:36509134-36509626 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 489 |
| Conread position: | 24-583 |
| Cow position: | chr18:51481682-51482245 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 179 |
| Conread position: | 24-617 |
| Cow position: | chr18:54271296-54271890 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 124 |
| Conread position: | 24-630 |
| Cow position: | chr18:37506756-37507382 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 24-640 |
| Cow position: | chr18:41840013-41839391 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 353 |
| Conread position: | 24-641 |
| Cow position: | chr18:16088942-16089556 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 18 |
| Conread position: | 24-641 |
| Cow position: | chr18:16175819-16175182 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 438 |
| Conread position: | 24-641 |
| Cow position: | chr18:27837513-27836877 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 581 |
| Conread position: | 24-641 |
| Cow position: | chr18:40479184-40479834 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 190 |
| Conread position: | 24-641 |
| Cow position: | chr18:52651712-52652349 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 24-647 |
| Cow position: | chr18:14416780-14417418 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 521 |
| Conread position: | 24-651 |
| Cow position: | chr18:28973089-28972442 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 439 |
| Conread position: | 24-651 |
| Cow position: | chr18:54023341-54022684 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 25-625 |
| Cow position: | chr18:14131189-14131811 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 582 |
| Conread position: | 25-651 |
| Cow position: | chr18:23798445-23799092 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 439 |
| Conread position: | 26-448 |
| Cow position: | chr18:32768456-32768891 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 65 |
| Conread position: | 46-651 |
| Cow position: | chr18:27988008-27988629 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 401 |
| Conread position: | 67-617 |
| Cow position: | chr18:29237761-29238306 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 31 |
| Conread position: | 79-509 |
| Cow position: | chr18:15850299-15850717 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 256, 25 |
| Conread position: | 107-651 |
| Cow position: | chr18:47742387-47742952 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 52 |
| Conread position: | 117-651 |
| Cow position: | chr18:15856136-15856664 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 357 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 6, 65 |
| Conread position: | 123-630 |
| Cow position: | chr18:54005272-54004752 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 62 |
| Conread position: | 162-651 |
| Cow position: | chr18:38343339-38342850 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 44, 96 |
| Conread position: | 188-646 |
| Cow position: | chr18:15821855-15821392 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 143 |
| Conread position: | 200-645 |
| Cow position: | chr18:32726405-32725954 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 289 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 51, 81 |
| Conread position: | 231-651 |
| Cow position: | chr18:56013582-56014031 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 315 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 20, 207 |
| Conread position: | 261-615 |
| Cow position: | chr18:46867857-46867502 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 95, 33 |
| Conread position: | 285-647 |
| Cow position: | chr18:51461991-51461606 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 321 |
| Conread position: | 294-546 |
| Cow position: | chr18:18528165-18528431 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 319-645 |
| Cow position: | chr18:32768854-32769189 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 12, 63 |
| Conread position: | 322-648 |
| Cow position: | chr18:40345291-40344959 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 17 |
| Conread position: | 328-570 |
| Cow position: | chr18:33270060-33270300 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 340-630 |
| Cow position: | chr18:29865484-29865187 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 34 |
| Conread position: | 342-546 |
| Cow position: | chr18:26246632-26246837 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 342-651 |
| Cow position: | chr18:25352383-25352706 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 348-560 |
| Cow position: | chr18:33751394-33751606 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 28, 121 |
| Conread position: | 352-580 |
| Cow position: | chr18:51614511-51614279 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 353-617 |
| Cow position: | chr18:42515333-42515616 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 231 |
| Conread position: | 376-616 |
| Cow position: | chr18:12237390-12237624 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 376-645 |
| Cow position: | chr18:37663507-37663779 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 159 |
| Conread position: | 376-651 |
| Cow position: | chr18:54170348-54170061 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 415-641 |
| Cow position: | chr18:16392879-16392650 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 472-617 |
| Cow position: | chr18:46876071-46875921 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 491-625 |
| Cow position: | chr18:25921251-25921396 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 495-624 |
| Cow position: | chr18:36509897-36510031 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.