Cow genome map
Conread name: | rret28_l8.y1 |
Conread position: | 18-651 |
Cow position: | chr19:50723335-50723998 (view UCSC Genome Browser custom track) |
Alignm length: | 670 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 7 |
Conread position: | 21-272 |
Cow position: | chr19:6548804-6549061 (view UCSC Genome Browser custom track) |
Alignm length: | 258 |
Alignm identity: | 183 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 54, 0 |
Conread position: | 21-283 |
Cow position: | chr19:53844385-53844651 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 193 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 8, 12 |
Conread position: | 21-616 |
Cow position: | chr19:3138722-3139341 (view UCSC Genome Browser custom track) |
Alignm length: | 626 |
Alignm identity: | 467 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 171 |
Conread position: | 21-647 |
Cow position: | chr19:28405908-28405259 (view UCSC Genome Browser custom track) |
Alignm length: | 655 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 362 |
Conread position: | 22-140 |
Cow position: | chr19:39668695-39668576 (view UCSC Genome Browser custom track) |
Alignm length: | 120 |
Alignm identity: | 98 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 22-527 |
Cow position: | chr19:75453-74942 (view UCSC Genome Browser custom track) |
Alignm length: | 531 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 140 |
Conread position: | 22-546 |
Cow position: | chr19:32182281-32181738 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 162 |
Conread position: | 22-616 |
Cow position: | chr19:43144507-43145126 (view UCSC Genome Browser custom track) |
Alignm length: | 622 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 491 |
Conread position: | 22-617 |
Cow position: | chr19:20105507-20106142 (view UCSC Genome Browser custom track) |
Alignm length: | 637 |
Alignm identity: | 447 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 607 |
Conread position: | 22-647 |
Cow position: | chr19:135991-135351 (view UCSC Genome Browser custom track) |
Alignm length: | 649 |
Alignm identity: | 467 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 32 |
Conread position: | 22-651 |
Cow position: | chr19:39093-39750 (view UCSC Genome Browser custom track) |
Alignm length: | 658 |
Alignm identity: | 459 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 22-651 |
Cow position: | chr19:773392-774053 (view UCSC Genome Browser custom track) |
Alignm length: | 664 |
Alignm identity: | 471 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 462 |
Conread position: | 22-651 |
Cow position: | chr19:7342864-7343521 (view UCSC Genome Browser custom track) |
Alignm length: | 658 |
Alignm identity: | 466 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 0 |
Conread position: | 22-651 |
Cow position: | chr19:28594348-28594987 (view UCSC Genome Browser custom track) |
Alignm length: | 651 |
Alignm identity: | 459 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 449 |
Conread position: | 23-651 |
Cow position: | chr19:5900704-5900058 (view UCSC Genome Browser custom track) |
Alignm length: | 650 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 323 |
Conread position: | 24-182 |
Cow position: | chr19:40816768-40816607 (view UCSC Genome Browser custom track) |
Alignm length: | 163 |
Alignm identity: | 122 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 38, 46 |
Conread position: | 24-354 |
Cow position: | chr19:190174-190514 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 237 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 51, 190 |
Conread position: | 24-445 |
Cow position: | chr19:33942404-33942847 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 24-532 |
Cow position: | chr19:2273582-2273057 (view UCSC Genome Browser custom track) |
Alignm length: | 529 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 155 |
Conread position: | 24-587 |
Cow position: | chr19:32193813-32194410 (view UCSC Genome Browser custom track) |
Alignm length: | 598 |
Alignm identity: | 418 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 0 |
Conread position: | 24-634 |
Cow position: | chr19:9707330-9706730 (view UCSC Genome Browser custom track) |
Alignm length: | 630 |
Alignm identity: | 452 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 123 |
Conread position: | 24-641 |
Cow position: | chr19:4386426-4387053 (view UCSC Genome Browser custom track) |
Alignm length: | 639 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 18 |
Conread position: | 24-641 |
Cow position: | chr19:12773917-12774545 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 179 |
Conread position: | 24-641 |
Cow position: | chr19:28580859-28580231 (view UCSC Genome Browser custom track) |
Alignm length: | 641 |
Alignm identity: | 461 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 179 |
Conread position: | 24-641 |
Cow position: | chr19:39391310-39391960 (view UCSC Genome Browser custom track) |
Alignm length: | 652 |
Alignm identity: | 479 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 413 |
Conread position: | 24-645 |
Cow position: | chr19:892804-892189 (view UCSC Genome Browser custom track) |
Alignm length: | 644 |
Alignm identity: | 467 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 193 |
Conread position: | 24-647 |
Cow position: | chr19:33874225-33874869 (view UCSC Genome Browser custom track) |
Alignm length: | 649 |
Alignm identity: | 477 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 582 |
Conread position: | 24-651 |
Cow position: | chr19:32211276-32210624 (view UCSC Genome Browser custom track) |
Alignm length: | 657 |
Alignm identity: | 445 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 333 |
Conread position: | 24-651 |
Cow position: | chr19:39184739-39184089 (view UCSC Genome Browser custom track) |
Alignm length: | 656 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 406 |
Conread position: | 24-651 |
Cow position: | chr19:40851640-40851012 (view UCSC Genome Browser custom track) |
Alignm length: | 645 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 95 |
Conread position: | 25-342 |
Cow position: | chr19:52151033-52150712 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 191 |
Conread position: | 25-651 |
Cow position: | chr19:438635-437983 (view UCSC Genome Browser custom track) |
Alignm length: | 654 |
Alignm identity: | 462 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 410 |
Conread position: | 31-387 |
Cow position: | chr19:27051698-27051343 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 260 |
Alignm E-value: | 4.06377e-44 |
Alignm gaps (pig, cow): | 44, 118 |
Conread position: | 45-649 |
Cow position: | chr19:5162871-5162273 (view UCSC Genome Browser custom track) |
Alignm length: | 617 |
Alignm identity: | 378 |
Alignm E-value: | 3e-30 |
Alignm gaps (pig, cow): | 67, 30 |
Conread position: | 53-534 |
Cow position: | chr19:1656247-1656754 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 101 |
Conread position: | 76-651 |
Cow position: | chr19:1588361-1587794 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 440 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 140 |
Conread position: | 106-651 |
Cow position: | chr19:7489231-7489805 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 431 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 403 |
Conread position: | 120-647 |
Cow position: | chr19:35384709-35384170 (view UCSC Genome Browser custom track) |
Alignm length: | 552 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 131 |
Conread position: | 149-641 |
Cow position: | chr19:5729802-5730300 (view UCSC Genome Browser custom track) |
Alignm length: | 509 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 149 |
Conread position: | 152-583 |
Cow position: | chr19:167638-167179 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 26 |
Conread position: | 175-617 |
Cow position: | chr19:39096109-39096554 (view UCSC Genome Browser custom track) |
Alignm length: | 463 |
Alignm identity: | 308 |
Alignm E-value: | 7e-38 |
Alignm gaps (pig, cow): | 163, 12 |
Conread position: | 192-630 |
Cow position: | chr19:28366987-28367411 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 187 |
Conread position: | 195-478 |
Cow position: | chr19:23376800-23377085 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 206 |
Alignm E-value: | 6e-37 |
Alignm gaps (pig, cow): | 56, 140 |
Conread position: | 195-647 |
Cow position: | chr19:48861229-48860764 (view UCSC Genome Browser custom track) |
Alignm length: | 476 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 264 |
Conread position: | 212-651 |
Cow position: | chr19:25924319-25924779 (view UCSC Genome Browser custom track) |
Alignm length: | 466 |
Alignm identity: | 306 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 37, 331 |
Conread position: | 256-606 |
Cow position: | chr19:6713672-6713327 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 81 |
Conread position: | 261-645 |
Cow position: | chr19:256307-256705 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 214 |
Conread position: | 276-564 |
Cow position: | chr19:32204349-32204649 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 215 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 36, 25 |
Conread position: | 287-651 |
Cow position: | chr19:40816450-40816058 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 0 |
Conread position: | 317-546 |
Cow position: | chr19:32220498-32220267 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 167 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 59, 13 |
Conread position: | 322-651 |
Cow position: | chr19:173367-173706 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 104 |
Conread position: | 338-643 |
Cow position: | chr19:40886594-40886291 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 221 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 38, 112 |
Conread position: | 338-651 |
Cow position: | chr19:342365-342675 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 222 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 38, 187 |
Conread position: | 340-561 |
Cow position: | chr19:24294238-24294467 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 176 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 340-651 |
Cow position: | chr19:33527240-33527565 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 233 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 36, 258 |
Conread position: | 340-651 |
Cow position: | chr19:52150557-52150231 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 264 |
Conread position: | 344-648 |
Cow position: | chr19:1489866-1489550 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 225 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 53, 72 |
Conread position: | 353-630 |
Cow position: | chr19:39667389-39667111 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 51 |
Conread position: | 366-646 |
Cow position: | chr19:3173968-3174263 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 216 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 11, 105 |
Conread position: | 377-651 |
Cow position: | chr19:33653559-33653278 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 202 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 33, 202 |
Conread position: | 378-630 |
Cow position: | chr19:161967-161707 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 201 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 95 |
Conread position: | 393-524 |
Cow position: | chr19:27050980-27050846 (view UCSC Genome Browser custom track) |
Alignm length: | 135 |
Alignm identity: | 105 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 8, 0 |
Conread position: | 400-651 |
Cow position: | chr19:376529-376264 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 195 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 48, 10 |
Conread position: | 406-625 |
Cow position: | chr19:21339522-21339295 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 173 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 41, 19 |
Conread position: | 475-651 |
Cow position: | chr19:205771-205954 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 136 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 71, 0 |
Conread position: | 495-641 |
Cow position: | chr19:33942857-33943012 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 124 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 52, 94 |
Show alignments to all cow chromosomes.