Cow genome map
Conread name: | rret28_l8.y1 |
Conread position: | 18-651 |
Cow position: | chr21:40270806-40270151 (view UCSC Genome Browser custom track) |
Alignm length: | 662 |
Alignm identity: | 490 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 186 |
Conread position: | 20-302 |
Cow position: | chr21:445993-446270 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 65 |
Conread position: | 20-647 |
Cow position: | chr21:21915560-21916211 (view UCSC Genome Browser custom track) |
Alignm length: | 666 |
Alignm identity: | 465 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 33 |
Conread position: | 22-180 |
Cow position: | chr21:47949932-47950095 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 121 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 22-400 |
Cow position: | chr21:13313634-13314019 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 210 |
Conread position: | 22-640 |
Cow position: | chr21:39425934-39426584 (view UCSC Genome Browser custom track) |
Alignm length: | 656 |
Alignm identity: | 461 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 133 |
Conread position: | 22-641 |
Cow position: | chr21:28256301-28256935 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 440 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 277 |
Conread position: | 22-651 |
Cow position: | chr21:11506468-11507138 (view UCSC Genome Browser custom track) |
Alignm length: | 675 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 152 |
Conread position: | 22-651 |
Cow position: | chr21:12055131-12054493 (view UCSC Genome Browser custom track) |
Alignm length: | 647 |
Alignm identity: | 444 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 252 |
Conread position: | 22-651 |
Cow position: | chr21:37372112-37372760 (view UCSC Genome Browser custom track) |
Alignm length: | 654 |
Alignm identity: | 466 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 51 |
Conread position: | 24-345 |
Cow position: | chr21:360516-360843 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 24-394 |
Cow position: | chr21:37719146-37718769 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 269 |
Conread position: | 24-445 |
Cow position: | chr21:10567550-10567983 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 96 |
Conread position: | 24-483 |
Cow position: | chr21:21943889-21943416 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 308 |
Alignm E-value: | 9.00054e-42 |
Alignm gaps (pig, cow): | 51, 120 |
Conread position: | 24-559 |
Cow position: | chr21:2882865-2882317 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 409 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 153 |
Conread position: | 24-590 |
Cow position: | chr21:1192633-1193213 (view UCSC Genome Browser custom track) |
Alignm length: | 587 |
Alignm identity: | 443 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 179 |
Conread position: | 24-611 |
Cow position: | chr21:26402615-26402010 (view UCSC Genome Browser custom track) |
Alignm length: | 612 |
Alignm identity: | 452 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 352 |
Conread position: | 24-616 |
Cow position: | chr21:467751-468340 (view UCSC Genome Browser custom track) |
Alignm length: | 607 |
Alignm identity: | 459 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 131 |
Conread position: | 24-630 |
Cow position: | chr21:3779641-3780270 (view UCSC Genome Browser custom track) |
Alignm length: | 631 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 145 |
Conread position: | 24-630 |
Cow position: | chr21:35144635-35145251 (view UCSC Genome Browser custom track) |
Alignm length: | 626 |
Alignm identity: | 468 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 90 |
Conread position: | 24-641 |
Cow position: | chr21:31515452-31514800 (view UCSC Genome Browser custom track) |
Alignm length: | 656 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 18 |
Conread position: | 24-641 |
Cow position: | chr21:33253050-33253697 (view UCSC Genome Browser custom track) |
Alignm length: | 651 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 241 |
Conread position: | 24-643 |
Cow position: | chr21:4589121-4588465 (view UCSC Genome Browser custom track) |
Alignm length: | 664 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 110 |
Conread position: | 24-645 |
Cow position: | chr21:37148907-37149541 (view UCSC Genome Browser custom track) |
Alignm length: | 648 |
Alignm identity: | 436 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 39 |
Conread position: | 24-646 |
Cow position: | chr21:18817681-18817029 (view UCSC Genome Browser custom track) |
Alignm length: | 657 |
Alignm identity: | 489 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 493 |
Conread position: | 24-649 |
Cow position: | chr21:20743709-20743100 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 456 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 249 |
Conread position: | 24-651 |
Cow position: | chr21:29955-30581 (view UCSC Genome Browser custom track) |
Alignm length: | 646 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 8 |
Conread position: | 24-651 |
Cow position: | chr21:146802-147448 (view UCSC Genome Browser custom track) |
Alignm length: | 652 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 409 |
Conread position: | 24-651 |
Cow position: | chr21:2417088-2417733 (view UCSC Genome Browser custom track) |
Alignm length: | 653 |
Alignm identity: | 495 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 300 |
Conread position: | 24-651 |
Cow position: | chr21:5840391-5839736 (view UCSC Genome Browser custom track) |
Alignm length: | 656 |
Alignm identity: | 498 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 24-651 |
Cow position: | chr21:10850953-10851597 (view UCSC Genome Browser custom track) |
Alignm length: | 656 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 160 |
Conread position: | 24-651 |
Cow position: | chr21:27070094-27069440 (view UCSC Genome Browser custom track) |
Alignm length: | 658 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 138 |
Conread position: | 26-336 |
Cow position: | chr21:49325345-49325651 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 204 |
Alignm E-value: | 8e-30 |
Alignm gaps (pig, cow): | 49, 41 |
Conread position: | 30-647 |
Cow position: | chr21:21519513-21520117 (view UCSC Genome Browser custom track) |
Alignm length: | 637 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 56 |
Conread position: | 43-644 |
Cow position: | chr21:39087896-39088500 (view UCSC Genome Browser custom track) |
Alignm length: | 619 |
Alignm identity: | 392 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 93 |
Conread position: | 78-615 |
Cow position: | chr21:9892820-9893375 (view UCSC Genome Browser custom track) |
Alignm length: | 562 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 9 |
Conread position: | 82-599 |
Cow position: | chr21:2540141-2539635 (view UCSC Genome Browser custom track) |
Alignm length: | 528 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 72 |
Conread position: | 91-463 |
Cow position: | chr21:37935769-37936154 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 0 |
Conread position: | 91-651 |
Cow position: | chr21:2511787-2512373 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 29 |
Conread position: | 120-345 |
Cow position: | chr21:6624746-6624971 (view UCSC Genome Browser custom track) |
Alignm length: | 227 |
Alignm identity: | 179 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 123 |
Conread position: | 128-651 |
Cow position: | chr21:34823231-34822686 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 42 |
Conread position: | 130-651 |
Cow position: | chr21:2711950-2712446 (view UCSC Genome Browser custom track) |
Alignm length: | 527 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 318, 17 |
Conread position: | 142-651 |
Cow position: | chr21:42914361-42914889 (view UCSC Genome Browser custom track) |
Alignm length: | 533 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 55 |
Conread position: | 143-546 |
Cow position: | chr21:28985114-28985517 (view UCSC Genome Browser custom track) |
Alignm length: | 412 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 16 |
Conread position: | 169-561 |
Cow position: | chr21:26835913-26836326 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 312 |
Conread position: | 170-651 |
Cow position: | chr21:45782505-45783001 (view UCSC Genome Browser custom track) |
Alignm length: | 497 |
Alignm identity: | 354 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 0 |
Conread position: | 179-648 |
Cow position: | chr21:37795101-37795582 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 302 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 48, 40 |
Conread position: | 185-641 |
Cow position: | chr21:30598435-30597964 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 8 |
Conread position: | 186-650 |
Cow position: | chr21:36979873-36979398 (view UCSC Genome Browser custom track) |
Alignm length: | 481 |
Alignm identity: | 313 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 65, 144 |
Conread position: | 190-651 |
Cow position: | chr21:45786389-45785912 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 320 |
Alignm E-value: | 7e-40 |
Alignm gaps (pig, cow): | 14, 28 |
Conread position: | 193-641 |
Cow position: | chr21:27284499-27284983 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 357 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 420 |
Conread position: | 209-651 |
Cow position: | chr21:27036338-27035873 (view UCSC Genome Browser custom track) |
Alignm length: | 467 |
Alignm identity: | 335 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 398 |
Conread position: | 212-626 |
Cow position: | chr21:29625678-29625225 (view UCSC Genome Browser custom track) |
Alignm length: | 456 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 417 |
Conread position: | 229-651 |
Cow position: | chr21:47942030-47942473 (view UCSC Genome Browser custom track) |
Alignm length: | 446 |
Alignm identity: | 328 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 22 |
Conread position: | 246-630 |
Cow position: | chr21:28736274-28736667 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 140 |
Conread position: | 247-651 |
Cow position: | chr21:26849920-26849493 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 292 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 10, 40 |
Conread position: | 257-651 |
Cow position: | chr21:47646453-47646854 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 57 |
Conread position: | 261-651 |
Cow position: | chr21:40683330-40682919 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 244 |
Conread position: | 267-651 |
Cow position: | chr21:11452424-11452025 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 278 |
Alignm E-value: | 4.06377e-44 |
Alignm gaps (pig, cow): | 77, 138 |
Conread position: | 286-651 |
Cow position: | chr21:7063653-7064028 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 54 |
Conread position: | 323-651 |
Cow position: | chr21:360847-361190 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 252 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 35, 45 |
Conread position: | 326-630 |
Cow position: | chr21:1287014-1286715 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 223 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 51, 77 |
Conread position: | 326-651 |
Cow position: | chr21:26635970-26635633 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 231 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 37, 127 |
Conread position: | 337-506 |
Cow position: | chr21:30562683-30562849 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 133 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 39, 107 |
Conread position: | 338-647 |
Cow position: | chr21:28613551-28613845 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 228 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 38, 15 |
Conread position: | 342-546 |
Cow position: | chr21:4077988-4078187 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 153 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 34, 62 |
Conread position: | 342-649 |
Cow position: | chr21:49296105-49296408 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 209 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 34, 100 |
Conread position: | 353-651 |
Cow position: | chr21:5012489-5012184 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 223 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 49, 21 |
Conread position: | 375-643 |
Cow position: | chr21:4185164-4185435 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 14 |
Conread position: | 381-651 |
Cow position: | chr21:10567947-10568224 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 209 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 210 |
Conread position: | 396-581 |
Cow position: | chr21:37718647-37718461 (view UCSC Genome Browser custom track) |
Alignm length: | 191 |
Alignm identity: | 145 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 51, 7 |
Conread position: | 396-647 |
Cow position: | chr21:34594734-34594491 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 176 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 149, 52 |
Conread position: | 405-630 |
Cow position: | chr21:5018412-5018638 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 167 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 7, 43 |
Show alignments to all cow chromosomes.