Cow genome map

Conread name: rret28_l8.y1

Conread position: 18-651
Cow position: chr21:40270806-40270151 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 186

Conread position: 20-302
Cow position: chr21:445993-446270 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 65

Conread position: 20-647
Cow position: chr21:21915560-21916211 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 33

Conread position: 22-180
Cow position: chr21:47949932-47950095 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 22-400
Cow position: chr21:13313634-13314019 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 210

Conread position: 22-640
Cow position: chr21:39425934-39426584 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 133

Conread position: 22-641
Cow position: chr21:28256301-28256935 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 277

Conread position: 22-651
Cow position: chr21:11506468-11507138 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 152

Conread position: 22-651
Cow position: chr21:12055131-12054493 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 252

Conread position: 22-651
Cow position: chr21:37372112-37372760 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 51

Conread position: 24-345
Cow position: chr21:360516-360843 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 24-394
Cow position: chr21:37719146-37718769 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 269

Conread position: 24-445
Cow position: chr21:10567550-10567983 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 96

Conread position: 24-483
Cow position: chr21:21943889-21943416 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 308
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 51, 120

Conread position: 24-559
Cow position: chr21:2882865-2882317 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 153

Conread position: 24-590
Cow position: chr21:1192633-1193213 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 179

Conread position: 24-611
Cow position: chr21:26402615-26402010 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 352

Conread position: 24-616
Cow position: chr21:467751-468340 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 131

Conread position: 24-630
Cow position: chr21:3779641-3780270 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 145

Conread position: 24-630
Cow position: chr21:35144635-35145251 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 90

Conread position: 24-641
Cow position: chr21:31515452-31514800 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 18

Conread position: 24-641
Cow position: chr21:33253050-33253697 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 241

Conread position: 24-643
Cow position: chr21:4589121-4588465 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 110

Conread position: 24-645
Cow position: chr21:37148907-37149541 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 39

Conread position: 24-646
Cow position: chr21:18817681-18817029 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 493

Conread position: 24-649
Cow position: chr21:20743709-20743100 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 249

Conread position: 24-651
Cow position: chr21:29955-30581 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 8

Conread position: 24-651
Cow position: chr21:146802-147448 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 409

Conread position: 24-651
Cow position: chr21:2417088-2417733 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 300

Conread position: 24-651
Cow position: chr21:5840391-5839736 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 24-651
Cow position: chr21:10850953-10851597 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 160

Conread position: 24-651
Cow position: chr21:27070094-27069440 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 138

Conread position: 26-336
Cow position: chr21:49325345-49325651 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 204
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 49, 41

Conread position: 30-647
Cow position: chr21:21519513-21520117 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 56

Conread position: 43-644
Cow position: chr21:39087896-39088500 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 93

Conread position: 78-615
Cow position: chr21:9892820-9893375 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 9

Conread position: 82-599
Cow position: chr21:2540141-2539635 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 72

Conread position: 91-463
Cow position: chr21:37935769-37936154 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 0

Conread position: 91-651
Cow position: chr21:2511787-2512373 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 29

Conread position: 120-345
Cow position: chr21:6624746-6624971 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 123

Conread position: 128-651
Cow position: chr21:34823231-34822686 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 42

Conread position: 130-651
Cow position: chr21:2711950-2712446 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 17

Conread position: 142-651
Cow position: chr21:42914361-42914889 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 55

Conread position: 143-546
Cow position: chr21:28985114-28985517 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 16

Conread position: 169-561
Cow position: chr21:26835913-26836326 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 312

Conread position: 170-651
Cow position: chr21:45782505-45783001 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 179-648
Cow position: chr21:37795101-37795582 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 302
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 40

Conread position: 185-641
Cow position: chr21:30598435-30597964 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 8

Conread position: 186-650
Cow position: chr21:36979873-36979398 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 313
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 65, 144

Conread position: 190-651
Cow position: chr21:45786389-45785912 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 320
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 14, 28

Conread position: 193-641
Cow position: chr21:27284499-27284983 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 420

Conread position: 209-651
Cow position: chr21:27036338-27035873 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 398

Conread position: 212-626
Cow position: chr21:29625678-29625225 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 417

Conread position: 229-651
Cow position: chr21:47942030-47942473 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 22

Conread position: 246-630
Cow position: chr21:28736274-28736667 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 140

Conread position: 247-651
Cow position: chr21:26849920-26849493 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 292
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 10, 40

Conread position: 257-651
Cow position: chr21:47646453-47646854 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 57

Conread position: 261-651
Cow position: chr21:40683330-40682919 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 244

Conread position: 267-651
Cow position: chr21:11452424-11452025 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 278
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 77, 138

Conread position: 286-651
Cow position: chr21:7063653-7064028 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 54

Conread position: 323-651
Cow position: chr21:360847-361190 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 252
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 35, 45

Conread position: 326-630
Cow position: chr21:1287014-1286715 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 77

Conread position: 326-651
Cow position: chr21:26635970-26635633 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 231
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 37, 127

Conread position: 337-506
Cow position: chr21:30562683-30562849 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 107

Conread position: 338-647
Cow position: chr21:28613551-28613845 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 228
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 38, 15

Conread position: 342-546
Cow position: chr21:4077988-4078187 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 34, 62

Conread position: 342-649
Cow position: chr21:49296105-49296408 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 100

Conread position: 353-651
Cow position: chr21:5012489-5012184 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 223
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 49, 21

Conread position: 375-643
Cow position: chr21:4185164-4185435 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 14

Conread position: 381-651
Cow position: chr21:10567947-10568224 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 210

Conread position: 396-581
Cow position: chr21:37718647-37718461 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 7

Conread position: 396-647
Cow position: chr21:34594734-34594491 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 149, 52

Conread position: 405-630
Cow position: chr21:5018412-5018638 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 7, 43

Show alignments to all cow chromosomes.