Cow genome map
| Conread name: | rret28_l8.y1 |
| Conread position: | 21-651 |
| Cow position: | chr28:15035352-15034716 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 185 |
| Conread position: | 22-296 |
| Cow position: | chr28:7823287-7823566 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 100 |
| Conread position: | 22-344 |
| Cow position: | chr28:17389228-17389557 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 45 |
| Conread position: | 22-546 |
| Cow position: | chr28:6538518-6537977 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 206 |
| Conread position: | 22-546 |
| Cow position: | chr28:14751287-14751831 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 22-593 |
| Cow position: | chr28:5814134-5814691 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 22-650 |
| Cow position: | chr28:7811210-7811815 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 22-650 |
| Cow position: | chr28:24668364-24669001 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 174 |
| Conread position: | 22-651 |
| Cow position: | chr28:24589598-24590255 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 32 |
| Conread position: | 23-630 |
| Cow position: | chr28:21360227-21360862 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 166 |
| Conread position: | 23-647 |
| Cow position: | chr28:8720204-8719565 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 421 |
| Conread position: | 24-160 |
| Cow position: | chr28:11490755-11490618 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 24-464 |
| Cow position: | chr28:5113548-5113092 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 23 |
| Conread position: | 24-590 |
| Cow position: | chr28:12151053-12151640 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 220 |
| Conread position: | 24-600 |
| Cow position: | chr28:1814116-1813522 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 446 |
| Conread position: | 24-628 |
| Cow position: | chr28:5566902-5567512 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 320 |
| Conread position: | 24-630 |
| Cow position: | chr28:783424-784035 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 286 |
| Conread position: | 24-630 |
| Cow position: | chr28:12409478-12408852 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 156 |
| Conread position: | 24-640 |
| Cow position: | chr28:1505617-1506257 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 155 |
| Conread position: | 24-641 |
| Cow position: | chr28:1167129-1166501 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 228 |
| Conread position: | 24-641 |
| Cow position: | chr28:7002743-7003386 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 470 |
| Conread position: | 24-641 |
| Cow position: | chr28:13460721-13461368 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 413 |
| Conread position: | 24-641 |
| Cow position: | chr28:14704640-14703997 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 24-641 |
| Cow position: | chr28:22260404-22259762 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 460 |
| Conread position: | 24-644 |
| Cow position: | chr28:7741219-7741837 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 48 |
| Conread position: | 24-645 |
| Cow position: | chr28:5802781-5803417 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 24-647 |
| Cow position: | chr28:8379804-8380452 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 140 |
| Conread position: | 24-647 |
| Cow position: | chr28:32791627-32790990 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 266 |
| Conread position: | 24-651 |
| Cow position: | chr28:3191506-3190858 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 581 |
| Conread position: | 24-651 |
| Cow position: | chr28:5750950-5750305 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 138 |
| Conread position: | 24-651 |
| Cow position: | chr28:5938232-5938882 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 442 |
| Conread position: | 24-651 |
| Cow position: | chr28:10646653-10646030 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 172 |
| Conread position: | 24-651 |
| Cow position: | chr28:17666554-17665913 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 122 |
| Conread position: | 24-651 |
| Cow position: | chr28:18519698-18519053 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 437 |
| Conread position: | 24-651 |
| Cow position: | chr28:29820753-29821393 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 92 |
| Conread position: | 26-427 |
| Cow position: | chr28:3019968-3019538 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 413 |
| Conread position: | 26-577 |
| Cow position: | chr28:10072025-10072598 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 26-630 |
| Cow position: | chr28:26425506-26424878 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 583 |
| Conread position: | 30-641 |
| Cow position: | chr28:33253057-33253697 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 434 |
| Conread position: | 32-590 |
| Cow position: | chr28:24884222-24883649 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 333 |
| Conread position: | 33-651 |
| Cow position: | chr28:1386636-1386008 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 121 |
| Conread position: | 54-513 |
| Cow position: | chr28:29761151-29760675 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 90 |
| Conread position: | 57-650 |
| Cow position: | chr28:15586868-15587484 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 197 |
| Conread position: | 59-630 |
| Cow position: | chr28:5765526-5766103 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 77-626 |
| Cow position: | chr28:9179428-9179984 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 198 |
| Conread position: | 98-615 |
| Cow position: | chr28:10460778-10460248 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 127-651 |
| Cow position: | chr28:484738-484195 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 43 |
| Conread position: | 143-570 |
| Cow position: | chr28:4546288-4546710 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 26 |
| Conread position: | 144-647 |
| Cow position: | chr28:5799169-5799685 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 241 |
| Conread position: | 150-630 |
| Cow position: | chr28:14233060-14232556 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 49 |
| Conread position: | 159-501 |
| Cow position: | chr28:2988196-2987845 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 299 |
| Conread position: | 162-651 |
| Cow position: | chr28:14194635-14194152 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 53 |
| Conread position: | 163-651 |
| Cow position: | chr28:18146838-18146337 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 169-651 |
| Cow position: | chr28:34313866-34314348 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 304 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 79, 15 |
| Conread position: | 209-650 |
| Cow position: | chr28:1954291-1954757 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 400 |
| Conread position: | 216-449 |
| Cow position: | chr28:27678494-27678738 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 220-650 |
| Cow position: | chr28:22042327-22041886 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 118 |
| Conread position: | 228-589 |
| Cow position: | chr28:10470464-10470839 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 74 |
| Conread position: | 238-643 |
| Cow position: | chr28:7788927-7788510 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 62 |
| Conread position: | 251-651 |
| Cow position: | chr28:10496553-10496133 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 135 |
| Conread position: | 256-596 |
| Cow position: | chr28:13374252-13373918 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 102 |
| Conread position: | 260-534 |
| Cow position: | chr28:7027268-7026982 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 310-630 |
| Cow position: | chr28:17381815-17381493 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 28, 150 |
| Conread position: | 323-648 |
| Cow position: | chr28:21566517-21566854 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 332-628 |
| Cow position: | chr28:25760570-25760869 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 24, 54 |
| Conread position: | 337-647 |
| Cow position: | chr28:25169035-25168726 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 60 |
| Conread position: | 340-630 |
| Cow position: | chr28:22232201-22231898 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 340-651 |
| Cow position: | chr28:7827064-7827379 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 232 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 36, 125 |
| Conread position: | 342-627 |
| Cow position: | chr28:2085538-2085833 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 236 |
| Conread position: | 343-651 |
| Cow position: | chr28:6778862-6778539 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 155 |
| Conread position: | 361-647 |
| Cow position: | chr28:5913360-5913068 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 110 |
| Conread position: | 375-616 |
| Cow position: | chr28:11490143-11489905 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 24, 166 |
| Conread position: | 381-651 |
| Cow position: | chr28:17389520-17389796 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 406-601 |
| Cow position: | chr28:698391-698591 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 167 |
| Conread position: | 472-618 |
| Cow position: | chr28:5112930-5112782 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 74, 117 |
| Conread position: | 490-650 |
| Cow position: | chr28:2117209-2117376 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 97 |
Show alignments to all cow chromosomes.