Cow genome map

Conread name: rret28_l8.y1

Conread position: 13-630
Cow position: chr29:6213226-6213859 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 226

Conread position: 21-577
Cow position: chr29:32286910-32287472 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 30

Conread position: 21-645
Cow position: chr29:5958312-5958945 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 184

Conread position: 21-651
Cow position: chr29:9643053-9642425 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 325

Conread position: 22-317
Cow position: chr29:15948816-15948512 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 179
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 52, 161

Conread position: 22-562
Cow position: chr29:19885777-19886341 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 469

Conread position: 22-596
Cow position: chr29:16111089-16111692 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 22-610
Cow position: chr29:251483-252066 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 395
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 44, 106

Conread position: 22-617
Cow position: chr29:35297563-35298145 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 51

Conread position: 22-632
Cow position: chr29:13582790-13583422 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 169

Conread position: 22-644
Cow position: chr29:42803128-42803766 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 34

Conread position: 22-650
Cow position: chr29:31182114-31182769 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 283

Conread position: 22-651
Cow position: chr29:18856234-18855583 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 32

Conread position: 22-651
Cow position: chr29:27980215-27979562 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 100

Conread position: 22-651
Cow position: chr29:31096671-31096023 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 248

Conread position: 23-651
Cow position: chr29:32559043-32558389 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 345

Conread position: 24-281
Cow position: chr29:2690619-2690887 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 24-282
Cow position: chr29:16023251-16023508 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 194
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 48, 198

Conread position: 24-288
Cow position: chr29:14216681-14216948 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 170

Conread position: 24-336
Cow position: chr29:2840665-2840347 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 24-464
Cow position: chr29:6265562-6265097 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 24-561
Cow position: chr29:14210855-14210300 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 43

Conread position: 24-584
Cow position: chr29:669346-668779 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 344

Conread position: 24-625
Cow position: chr29:43323272-43323888 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 180

Conread position: 24-632
Cow position: chr29:16344952-16345543 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 69

Conread position: 24-641
Cow position: chr29:10647538-10646898 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 175

Conread position: 24-641
Cow position: chr29:20251877-20252512 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 582

Conread position: 24-641
Cow position: chr29:26164114-26163482 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 179

Conread position: 24-645
Cow position: chr29:5982000-5981354 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 44

Conread position: 24-645
Cow position: chr29:32804152-32804764 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 57

Conread position: 24-645
Cow position: chr29:45460434-45461104 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 24-647
Cow position: chr29:7430505-7429850 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 43

Conread position: 24-647
Cow position: chr29:14085417-14084771 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 127

Conread position: 24-647
Cow position: chr29:23976836-23977487 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 174

Conread position: 24-647
Cow position: chr29:34873542-34874162 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 16

Conread position: 24-651
Cow position: chr29:2100563-2101196 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 43

Conread position: 24-651
Cow position: chr29:2949623-2949001 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 83

Conread position: 24-651
Cow position: chr29:7845094-7845754 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 24-651
Cow position: chr29:10823261-10822619 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 204

Conread position: 24-651
Cow position: chr29:14586635-14587272 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 18

Conread position: 24-651
Cow position: chr29:25931825-25931168 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 18

Conread position: 24-651
Cow position: chr29:32540807-32541459 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 160

Conread position: 24-651
Cow position: chr29:34799092-34798448 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 168

Conread position: 24-651
Cow position: chr29:35815263-35814608 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 588

Conread position: 24-651
Cow position: chr29:38227691-38228336 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 177

Conread position: 24-651
Cow position: chr29:39078993-39078348 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 441

Conread position: 24-651
Cow position: chr29:40502265-40501640 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 174

Conread position: 25-647
Cow position: chr29:21426311-21425660 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 179

Conread position: 25-651
Cow position: chr29:32891511-32892154 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 236

Conread position: 30-536
Cow position: chr29:646518-647031 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 13

Conread position: 31-648
Cow position: chr29:8664243-8664872 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 10

Conread position: 43-651
Cow position: chr29:609892-609286 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 170

Conread position: 44-434
Cow position: chr29:31024054-31023657 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 255
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 62, 23

Conread position: 46-641
Cow position: chr29:19622547-19621925 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 50-645
Cow position: chr29:45586637-45586033 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 539

Conread position: 50-648
Cow position: chr29:9620161-9620758 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 130

Conread position: 61-502
Cow position: chr29:21238626-21238188 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 293
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 16, 134

Conread position: 63-651
Cow position: chr29:47701-47069 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 117

Conread position: 75-592
Cow position: chr29:8774542-8774014 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 339
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 32, 85

Conread position: 86-651
Cow position: chr29:19654409-19654986 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 106

Conread position: 89-627
Cow position: chr29:45205285-45205844 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 231

Conread position: 132-646
Cow position: chr29:38237699-38237163 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 43

Conread position: 150-630
Cow position: chr29:15997822-15997314 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 33

Conread position: 152-539
Cow position: chr29:801547-801155 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 236

Conread position: 165-649
Cow position: chr29:2747573-2747083 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 287

Conread position: 165-651
Cow position: chr29:13650916-13651396 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 8

Conread position: 172-571
Cow position: chr29:27263029-27262620 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 51

Conread position: 182-602
Cow position: chr29:14448780-14449199 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 72

Conread position: 195-617
Cow position: chr29:3176519-3176097 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 49

Conread position: 223-630
Cow position: chr29:2465951-2465517 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 299
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 27, 289

Conread position: 246-491
Cow position: chr29:34754165-34754414 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 171
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 88, 71

Conread position: 247-641
Cow position: chr29:16023511-16023916 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 265

Conread position: 247-651
Cow position: chr29:2691116-2691521 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 173
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 42, 333

Conread position: 247-651
Cow position: chr29:13622904-13622496 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 93

Conread position: 250-550
Cow position: chr29:37609171-37608861 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 200
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 67

Conread position: 256-630
Cow position: chr29:18397175-18397557 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 247
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 201

Conread position: 280-651
Cow position: chr29:42939225-42938838 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 329

Conread position: 340-617
Cow position: chr29:10849795-10850075 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 193
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 37, 249

Conread position: 340-649
Cow position: chr29:34525284-34525602 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 214
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 140

Conread position: 340-651
Cow position: chr29:3328376-3328701 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 258

Conread position: 340-651
Cow position: chr29:14112587-14112895 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 215
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 36, 103

Conread position: 340-651
Cow position: chr29:42092805-42093127 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 203
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 107, 127

Conread position: 341-651
Cow position: chr29:38207632-38207301 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 233
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 35, 264

Conread position: 350-651
Cow position: chr29:2840287-2839984 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 26, 51

Conread position: 362-648
Cow position: chr29:3699023-3699313 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 208
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 15, 93

Conread position: 400-641
Cow position: chr29:5236122-5236373 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 121

Conread position: 462-647
Cow position: chr29:36635220-36635027 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 88, 25

Conread position: 472-593
Cow position: chr29:6009697-6009818 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 472-641
Cow position: chr29:6264822-6264648 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 125, 78

Show alignments to all cow chromosomes.