Cow genome map

Conread name: rret28_l8.y1

Conread position: 20-617
Cow position: chr4:64984767-64985359 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 381
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 57, 129

Conread position: 20-651
Cow position: chr4:6489933-6489280 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 30

Conread position: 21-650
Cow position: chr4:12240778-12240134 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 107

Conread position: 21-651
Cow position: chr4:4416505-4417142 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 21

Conread position: 21-651
Cow position: chr4:27301037-27300405 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 84

Conread position: 22-160
Cow position: chr4:41958558-41958701 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 22-244
Cow position: chr4:6268230-6268007 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 160
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 56, 129

Conread position: 22-341
Cow position: chr4:18190827-18191152 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 22-626
Cow position: chr4:603447-604070 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 417

Conread position: 22-643
Cow position: chr4:60263730-60263081 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 133

Conread position: 22-650
Cow position: chr4:32212600-32213246 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 342

Conread position: 22-651
Cow position: chr4:159590-160241 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 574

Conread position: 22-651
Cow position: chr4:529832-530486 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 22

Conread position: 22-651
Cow position: chr4:1930196-1929554 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 20

Conread position: 22-651
Cow position: chr4:3126224-3126891 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 600

Conread position: 22-651
Cow position: chr4:17093433-17092781 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 29

Conread position: 22-651
Cow position: chr4:18337295-18337926 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 324

Conread position: 22-651
Cow position: chr4:18424093-18423435 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 255

Conread position: 24-270
Cow position: chr4:58689658-58689405 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 24-301
Cow position: chr4:29531445-29531167 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 123

Conread position: 24-400
Cow position: chr4:18517333-18517723 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 24-421
Cow position: chr4:31669710-31670114 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 155

Conread position: 24-421
Cow position: chr4:48026837-48027237 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 174

Conread position: 24-588
Cow position: chr4:27334146-27334729 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 441

Conread position: 24-597
Cow position: chr4:31564869-31564276 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 153

Conread position: 24-625
Cow position: chr4:13493753-13494380 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 587

Conread position: 24-641
Cow position: chr4:356344-356979 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 44

Conread position: 24-641
Cow position: chr4:10881982-10882625 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 487

Conread position: 24-641
Cow position: chr4:25599061-25598414 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 140

Conread position: 24-641
Cow position: chr4:33072386-33071750 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 440

Conread position: 24-641
Cow position: chr4:43881540-43882181 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 439

Conread position: 24-641
Cow position: chr4:44726031-44726661 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 179

Conread position: 24-645
Cow position: chr4:16360346-16360996 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 24-645
Cow position: chr4:41333147-41333761 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 135

Conread position: 24-645
Cow position: chr4:50975052-50975699 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 332

Conread position: 24-647
Cow position: chr4:1049826-1049181 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 441

Conread position: 24-649
Cow position: chr4:46664956-46665613 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 172

Conread position: 24-650
Cow position: chr4:28831993-28832633 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 244

Conread position: 24-651
Cow position: chr4:5880600-5881245 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 161

Conread position: 24-651
Cow position: chr4:6206031-6206685 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 119

Conread position: 24-651
Cow position: chr4:17925524-17924884 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 50

Conread position: 24-651
Cow position: chr4:22473788-22474431 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 43

Conread position: 24-651
Cow position: chr4:36896807-36897457 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 461

Conread position: 24-651
Cow position: chr4:43319209-43318558 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 640

Conread position: 24-651
Cow position: chr4:57984422-57985069 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 38

Conread position: 24-651
Cow position: chr4:67681626-67682274 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 582

Conread position: 25-641
Cow position: chr4:12587773-12588403 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 17

Conread position: 26-647
Cow position: chr4:16639047-16639694 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 407

Conread position: 36-645
Cow position: chr4:44925076-44924458 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 149

Conread position: 37-651
Cow position: chr4:5444389-5443744 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 577

Conread position: 43-543
Cow position: chr4:4438795-4439298 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 324
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 29, 114

Conread position: 64-554
Cow position: chr4:14775916-14776430 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 382

Conread position: 67-651
Cow position: chr4:44780748-44780143 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 200

Conread position: 74-651
Cow position: chr4:11110780-11110196 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 263

Conread position: 76-651
Cow position: chr4:5926353-5925760 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 69

Conread position: 77-561
Cow position: chr4:16057167-16057671 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 91

Conread position: 80-648
Cow position: chr4:61713109-61712539 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 49

Conread position: 85-630
Cow position: chr4:10093406-10093962 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 28

Conread position: 127-336
Cow position: chr4:100262-100052 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 123, 0

Conread position: 127-583
Cow position: chr4:49716218-49716685 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 306

Conread position: 133-583
Cow position: chr4:14820324-14819858 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 43

Conread position: 152-645
Cow position: chr4:51042724-51042214 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 269

Conread position: 154-651
Cow position: chr4:41955322-41955844 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 326

Conread position: 163-617
Cow position: chr4:27294740-27294258 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 7

Conread position: 163-631
Cow position: chr4:30471810-30472293 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 54

Conread position: 163-651
Cow position: chr4:45106036-45106547 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 444

Conread position: 180-647
Cow position: chr4:4177866-4178327 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 215

Conread position: 199-632
Cow position: chr4:54239598-54240027 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 299
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 130, 50

Conread position: 212-651
Cow position: chr4:69521190-69521617 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 66

Conread position: 218-645
Cow position: chr4:967447-967001 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 346

Conread position: 241-617
Cow position: chr4:493949-493555 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 268
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 15, 21

Conread position: 249-628
Cow position: chr4:9847560-9847155 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 216

Conread position: 270-651
Cow position: chr4:34178553-34178150 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 287-641
Cow position: chr4:26877079-26876702 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 302-629
Cow position: chr4:68110313-68109968 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 333-643
Cow position: chr4:14755900-14755587 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 230
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 20, 66

Conread position: 340-617
Cow position: chr4:20181802-20182076 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 192
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 37, 154

Conread position: 340-651
Cow position: chr4:99454-99141 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 230
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 36, 240

Conread position: 346-647
Cow position: chr4:47462586-47462897 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 200
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 56, 122

Conread position: 374-650
Cow position: chr4:42405402-42405689 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 28, 104

Conread position: 377-651
Cow position: chr4:41959697-41959981 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 33, 86

Conread position: 396-623
Cow position: chr4:48027830-48028062 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 135
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 194

Conread position: 400-647
Cow position: chr4:34183799-34183561 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 192
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 8, 48

Conread position: 400-648
Cow position: chr4:48027643-48027896 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 160
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 43, 30

Conread position: 401-626
Cow position: chr4:6567212-6567434 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 46, 147

Conread position: 415-616
Cow position: chr4:47253497-47253293 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 162

Conread position: 443-608
Cow position: chr4:30795529-30795364 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 161, 89

Conread position: 443-645
Cow position: chr4:41191734-41191527 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 99, 0

Conread position: 443-645
Cow position: chr4:41428179-41428384 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 159
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 93, 20

Conread position: 443-651
Cow position: chr4:57957865-57958065 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 163
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 161, 82

Conread position: 493-651
Cow position: chr4:13958096-13958258 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 130, 18

Show alignments to all cow chromosomes.