Cow genome map

Conread name: rret28_l8.y1

Conread position: 5-650
Cow position: chrX:12654039-12653365 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 508

Conread position: 13-441
Cow position: chrX:34345733-34346163 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 128

Conread position: 20-491
Cow position: chrX:23019830-23020314 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 21-492
Cow position: chrX:31186721-31186225 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 21-597
Cow position: chrX:21490688-21491255 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 34

Conread position: 21-650
Cow position: chrX:18659285-18658644 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 372

Conread position: 21-651
Cow position: chrX:12669247-12668593 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 21-651
Cow position: chrX:13076195-13075537 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 564

Conread position: 21-651
Cow position: chrX:13096769-13096100 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 575

Conread position: 21-651
Cow position: chrX:24134753-24134104 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 162

Conread position: 21-651
Cow position: chrX:24325078-24324406 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 591

Conread position: 21-651
Cow position: chrX:26766704-26766045 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 176

Conread position: 21-651
Cow position: chrX:28627133-28626476 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 547

Conread position: 21-651
Cow position: chrX:35530365-35531013 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 340

Conread position: 21-651
Cow position: chrX:38148096-38148751 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 182

Conread position: 22-345
Cow position: chrX:21589472-21589800 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 22-445
Cow position: chrX:20315558-20315120 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 22-614
Cow position: chrX:31493922-31494558 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 611

Conread position: 22-616
Cow position: chrX:5394506-5393885 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 491

Conread position: 22-626
Cow position: chrX:5283273-5282652 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 332

Conread position: 22-626
Cow position: chrX:5335982-5335356 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 590

Conread position: 22-626
Cow position: chrX:16811939-16811318 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 429

Conread position: 22-629
Cow position: chrX:7752403-7753033 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 162

Conread position: 22-630
Cow position: chrX:22618795-22618175 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 347

Conread position: 22-641
Cow position: chrX:6872569-6871921 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 491

Conread position: 22-645
Cow position: chrX:39563430-39562795 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 20

Conread position: 22-647
Cow position: chrX:2562354-2561703 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 254

Conread position: 22-647
Cow position: chrX:22816353-22816992 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 483

Conread position: 22-650
Cow position: chrX:8963072-8962415 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 549

Conread position: 22-650
Cow position: chrX:21340904-21341552 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 45

Conread position: 22-650
Cow position: chrX:30171330-30170686 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 446

Conread position: 22-651
Cow position: chrX:3084621-3083979 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 38

Conread position: 22-651
Cow position: chrX:5323219-5322567 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 101

Conread position: 22-651
Cow position: chrX:5863898-5864554 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 167

Conread position: 22-651
Cow position: chrX:7030964-7031623 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 592

Conread position: 22-651
Cow position: chrX:7482136-7482792 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 415

Conread position: 22-651
Cow position: chrX:8480154-8480811 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 597

Conread position: 22-651
Cow position: chrX:9125864-9126521 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 133

Conread position: 22-651
Cow position: chrX:11148832-11148176 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 254

Conread position: 22-651
Cow position: chrX:11422375-11423020 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 254

Conread position: 22-651
Cow position: chrX:12287899-12287243 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 162

Conread position: 22-651
Cow position: chrX:12315251-12314600 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 100

Conread position: 22-651
Cow position: chrX:12343446-12344096 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 140

Conread position: 22-651
Cow position: chrX:12703200-12702546 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 489

Conread position: 22-651
Cow position: chrX:14595357-14596005 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 94

Conread position: 22-651
Cow position: chrX:15178921-15178276 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 155

Conread position: 22-651
Cow position: chrX:16276153-16276808 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 101

Conread position: 22-651
Cow position: chrX:16362620-16361962 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 120

Conread position: 22-651
Cow position: chrX:17477921-17477264 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 590

Conread position: 22-651
Cow position: chrX:27425816-27425164 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 133

Conread position: 22-651
Cow position: chrX:28585483-28586140 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 22-651
Cow position: chrX:28651044-28650393 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 107

Conread position: 22-651
Cow position: chrX:29173259-29172602 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 590

Conread position: 22-651
Cow position: chrX:29885496-29886146 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 32

Conread position: 22-651
Cow position: chrX:29950095-29949439 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 125

Conread position: 22-651
Cow position: chrX:32066661-32066018 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 414

Conread position: 22-651
Cow position: chrX:41850691-41850054 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 21

Conread position: 23-569
Cow position: chrX:6282248-6281688 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 67

Conread position: 23-651
Cow position: chrX:3420701-3420052 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 232

Conread position: 24-175
Cow position: chrX:21223432-21223588 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 24-184
Cow position: chrX:18535013-18535173 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 83, 42

Conread position: 24-203
Cow position: chrX:22129269-22129085 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 144
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 24-204
Cow position: chrX:31372323-31372504 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 146
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 51, 125

Conread position: 24-252
Cow position: chrX:30712095-30712327 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 41, 175

Conread position: 24-272
Cow position: chrX:31198956-31199211 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 24-342
Cow position: chrX:15599471-15599795 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 24-342
Cow position: chrX:26399675-26399350 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 24-352
Cow position: chrX:20720496-20720835 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 146

Conread position: 24-370
Cow position: chrX:16699813-16700159 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 51

Conread position: 24-518
Cow position: chrX:29996691-29996192 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 322
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 36, 30

Conread position: 24-557
Cow position: chrX:13416924-13416377 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 137

Conread position: 24-564
Cow position: chrX:6249930-6249405 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 365
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 24, 12

Conread position: 24-582
Cow position: chrX:6242087-6241528 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 166

Conread position: 24-599
Cow position: chrX:21579974-21580573 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 179

Conread position: 24-602
Cow position: chrX:16041685-16041083 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 134

Conread position: 24-624
Cow position: chrX:23390011-23389392 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 441

Conread position: 24-625
Cow position: chrX:23277534-23278148 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 445

Conread position: 24-625
Cow position: chrX:27315781-27316405 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 145

Conread position: 24-637
Cow position: chrX:22488653-22489274 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 38

Conread position: 24-641
Cow position: chrX:1547485-1548128 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 153

Conread position: 24-641
Cow position: chrX:6014409-6013809 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 15

Conread position: 24-641
Cow position: chrX:29096711-29097347 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 148

Conread position: 24-644
Cow position: chrX:26758105-26757465 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 110

Conread position: 24-645
Cow position: chrX:320976-321607 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 24

Conread position: 24-645
Cow position: chrX:13053512-13054162 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 377

Conread position: 24-645
Cow position: chrX:21830037-21830682 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 179

Conread position: 24-645
Cow position: chrX:29853059-29852409 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 421

Conread position: 24-645
Cow position: chrX:44388277-44388908 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 30

Conread position: 24-647
Cow position: chrX:1834324-1834966 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 506

Conread position: 24-647
Cow position: chrX:37812668-37813301 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 328

Conread position: 24-650
Cow position: chrX:21059287-21059931 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 199

Conread position: 24-651
Cow position: chrX:971281-971935 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 447

Conread position: 24-651
Cow position: chrX:983168-983824 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 589

Conread position: 24-651
Cow position: chrX:2482124-2481476 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 264

Conread position: 24-651
Cow position: chrX:9008841-9009496 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 252

Conread position: 24-651
Cow position: chrX:12353746-12354395 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 403

Conread position: 24-651
Cow position: chrX:13412626-13411975 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 407

Conread position: 24-651
Cow position: chrX:15126730-15126067 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 592

Conread position: 24-651
Cow position: chrX:18953175-18952523 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 289

Conread position: 24-651
Cow position: chrX:23040616-23039972 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 181

Conread position: 24-651
Cow position: chrX:26528484-26529122 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 156

Conread position: 24-651
Cow position: chrX:30183412-30182774 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 186

Conread position: 24-651
Cow position: chrX:30366270-30365639 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 147

Conread position: 25-534
Cow position: chrX:23213840-23213331 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 330
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 77, 138

Conread position: 25-580
Cow position: chrX:5297041-5296462 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 25-650
Cow position: chrX:4796825-4797450 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 437

Conread position: 25-651
Cow position: chrX:15980450-15979799 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 217

Conread position: 30-641
Cow position: chrX:29935107-29935747 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 480

Conread position: 31-540
Cow position: chrX:17491450-17490931 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 334
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 51, 245

Conread position: 40-630
Cow position: chrX:13182597-13182001 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 245

Conread position: 43-630
Cow position: chrX:23132502-23133099 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 14

Conread position: 44-545
Cow position: chrX:2102711-2103229 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 44-649
Cow position: chrX:24195863-24195256 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 10

Conread position: 44-650
Cow position: chrX:35386658-35386043 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 414
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 21, 73

Conread position: 57-651
Cow position: chrX:29285969-29286589 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 552

Conread position: 59-651
Cow position: chrX:3375364-3374759 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 543

Conread position: 61-617
Cow position: chrX:28561344-28560776 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 13

Conread position: 63-649
Cow position: chrX:8588709-8589321 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 218

Conread position: 63-651
Cow position: chrX:13397655-13397059 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 116

Conread position: 66-590
Cow position: chrX:37849547-37850083 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 241

Conread position: 67-641
Cow position: chrX:30231547-30230950 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 118

Conread position: 71-646
Cow position: chrX:12461373-12461962 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 107

Conread position: 75-651
Cow position: chrX:23455460-23454864 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 521

Conread position: 77-570
Cow position: chrX:979155-979669 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 77-651
Cow position: chrX:2576981-2577583 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 437

Conread position: 91-651
Cow position: chrX:14460101-14460675 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 538

Conread position: 93-650
Cow position: chrX:4411241-4411796 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 81

Conread position: 119-617
Cow position: chrX:30011604-30012120 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 488

Conread position: 121-546
Cow position: chrX:2012092-2011656 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 218

Conread position: 126-649
Cow position: chrX:41102853-41102323 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 428

Conread position: 152-445
Cow position: chrX:27006125-27006437 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 208
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 114

Conread position: 162-651
Cow position: chrX:16779956-16780438 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 92

Conread position: 163-651
Cow position: chrX:27593340-27592832 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 441

Conread position: 165-645
Cow position: chrX:29793382-29792882 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 281

Conread position: 167-651
Cow position: chrX:26426912-26426426 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 109

Conread position: 187-651
Cow position: chrX:15487075-15486617 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 9

Conread position: 190-651
Cow position: chrX:30202055-30201579 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 448

Conread position: 191-617
Cow position: chrX:15309250-15308819 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 271
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 138, 79

Conread position: 196-570
Cow position: chrX:10745468-10745083 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 75

Conread position: 200-651
Cow position: chrX:674518-674046 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 409

Conread position: 211-651
Cow position: chrX:34219008-34219460 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 77

Conread position: 217-651
Cow position: chrX:2858681-2858217 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 370

Conread position: 239-634
Cow position: chrX:15590706-15591119 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 330

Conread position: 242-651
Cow position: chrX:27619412-27618973 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 372

Conread position: 247-647
Cow position: chrX:30057787-30058206 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 183

Conread position: 247-651
Cow position: chrX:3467901-3467486 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 93

Conread position: 247-651
Cow position: chrX:10416723-10416300 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 277
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 88, 147

Conread position: 247-651
Cow position: chrX:15623763-15623342 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 354

Conread position: 251-645
Cow position: chrX:8574739-8574347 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 279
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 125, 87

Conread position: 256-617
Cow position: chrX:31199297-31199680 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 34

Conread position: 259-651
Cow position: chrX:17667036-17666636 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 41

Conread position: 259-651
Cow position: chrX:27961602-27962012 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 247

Conread position: 261-651
Cow position: chrX:14784714-14784314 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 14

Conread position: 262-645
Cow position: chrX:20798071-20798461 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 273
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 73, 37

Conread position: 267-625
Cow position: chrX:35940495-35940141 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 252
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 68, 181

Conread position: 269-645
Cow position: chrX:30138825-30138426 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 228

Conread position: 311-645
Cow position: chrX:28868440-28868098 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 272

Conread position: 317-651
Cow position: chrX:7094214-7094562 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 57, 35

Conread position: 319-544
Cow position: chrX:16015606-16015379 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 57, 27

Conread position: 322-630
Cow position: chrX:36136737-36136432 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 160

Conread position: 322-645
Cow position: chrX:21589809-21590135 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 269

Conread position: 333-651
Cow position: chrX:24476364-24476037 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 218
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 258

Conread position: 340-547
Cow position: chrX:18535287-18535499 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 36, 0

Conread position: 340-594
Cow position: chrX:45377269-45377008 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 193
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 34, 158

Conread position: 340-602
Cow position: chrX:16700153-16700424 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 340-630
Cow position: chrX:8610864-8610571 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 15

Conread position: 340-651
Cow position: chrX:16463480-16463158 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 36, 110

Conread position: 340-651
Cow position: chrX:17052379-17052703 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 257

Conread position: 340-651
Cow position: chrX:37014958-37015282 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 257

Conread position: 341-630
Cow position: chrX:30069009-30068713 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 77

Conread position: 342-630
Cow position: chrX:9093412-9093710 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 78

Conread position: 348-649
Cow position: chrX:5651788-5651488 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 205
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 70, 25

Conread position: 361-651
Cow position: chrX:18220279-18220586 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 15, 0

Conread position: 374-641
Cow position: chrX:15600031-15600301 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 90

Conread position: 383-651
Cow position: chrX:2815602-2815323 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 19, 185

Conread position: 396-651
Cow position: chrX:12183834-12184100 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 183
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 14

Conread position: 400-590
Cow position: chrX:27495579-27495775 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 153
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 22, 192

Conread position: 400-626
Cow position: chrX:48368146-48367915 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 47, 195

Conread position: 400-630
Cow position: chrX:12480892-12481130 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 171
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 46, 164

Conread position: 403-651
Cow position: chrX:20695916-20695667 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 183
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 67, 44

Conread position: 404-630
Cow position: chrX:21644006-21643770 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 16, 0

Conread position: 410-651
Cow position: chrX:26399219-26398968 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 34

Conread position: 418-651
Cow position: chrX:46235659-46235904 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 189
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 33, 121

Conread position: 423-630
Cow position: chrX:27083888-27084101 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 34, 172

Conread position: 425-651
Cow position: chrX:18451902-18452139 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 22, 170

Conread position: 426-650
Cow position: chrX:28521671-28521443 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 21, 41

Conread position: 433-651
Cow position: chrX:20035470-20035242 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 115, 161

Conread position: 447-651
Cow position: chrX:2535123-2534912 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 99, 129

Conread position: 456-651
Cow position: chrX:5356868-5356670 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 90, 133

Conread position: 461-651
Cow position: chrX:24771903-24771703 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 70, 133

Conread position: 474-583
Cow position: chrX:30820543-30820657 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 96
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 476-632
Cow position: chrX:5305585-5305742 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 128, 0

Conread position: 495-617
Cow position: chrX:21486158-21486285 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 99

Show alignments to all cow chromosomes.