Cow genome map
| Conread name: | rret35_i21.y1 |
| Conread position: | 1-274 |
| Cow position: | chr1:71666559-71666278 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 215, 116 |
| Conread position: | 1-276 |
| Cow position: | chr1:55020103-55020377 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 37 |
| Conread position: | 1-281 |
| Cow position: | chr1:4032265-4032527 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 11, 102 |
| Conread position: | 1-283 |
| Cow position: | chr1:78184323-78184589 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 2-259 |
| Cow position: | chr1:52039254-52039517 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 162 |
| Conread position: | 2-281 |
| Cow position: | chr1:35162026-35162308 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 56 |
| Conread position: | 4-262 |
| Cow position: | chr1:3035371-3035109 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 4-262 |
| Cow position: | chr1:99105269-99105000 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 40, 165 |
| Conread position: | 4-268 |
| Cow position: | chr1:88028910-88029175 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 118 |
| Conread position: | 4-273 |
| Cow position: | chr1:36874637-36874908 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 77 |
| Conread position: | 4-273 |
| Cow position: | chr1:52564159-52563901 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 4-273 |
| Cow position: | chr1:54258191-54258458 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 111 |
| Conread position: | 4-273 |
| Cow position: | chr1:61350775-61351046 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 215, 18 |
| Conread position: | 4-273 |
| Cow position: | chr1:68446179-68445910 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 126, 91 |
| Conread position: | 4-273 |
| Cow position: | chr1:97284756-97284479 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 215, 65 |
| Conread position: | 4-274 |
| Cow position: | chr1:57076927-57077204 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 158, 108 |
| Conread position: | 4-276 |
| Cow position: | chr1:43285583-43285307 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 164, 80 |
| Conread position: | 4-281 |
| Cow position: | chr1:81180366-81180075 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 279 |
| Conread position: | 4-283 |
| Cow position: | chr1:15547090-15547371 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 34 |
| Conread position: | 4-283 |
| Cow position: | chr1:52434902-52435175 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 210, 84 |
| Conread position: | 4-283 |
| Cow position: | chr1:54199761-54199481 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 162 |
| Conread position: | 4-283 |
| Cow position: | chr1:57957239-57956955 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 38 |
| Conread position: | 4-286 |
| Cow position: | chr1:60032983-60032692 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 173 |
| Conread position: | 4-289 |
| Cow position: | chr1:46218199-46218490 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 271 |
| Conread position: | 4-295 |
| Cow position: | chr1:89344529-89344824 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 23 |
| Conread position: | 5-271 |
| Cow position: | chr1:52170964-52170687 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 8-259 |
| Cow position: | chr1:82884762-82884509 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 161 |
| Conread position: | 9-283 |
| Cow position: | chr1:22467549-22467833 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 271 |
| Conread position: | 12-273 |
| Cow position: | chr1:31341427-31341155 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 12-276 |
| Cow position: | chr1:69695381-69695105 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 10, 105 |
| Conread position: | 14-276 |
| Cow position: | chr1:77620175-77620449 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 15-276 |
| Cow position: | chr1:100400568-100400304 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 102 |
| Conread position: | 18-276 |
| Cow position: | chr1:76223058-76222793 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 18-283 |
| Cow position: | chr1:11914239-11913976 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 196, 112 |
| Conread position: | 18-283 |
| Cow position: | chr1:36997830-36998096 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 143 |
| Conread position: | 19-283 |
| Cow position: | chr1:90640666-90640932 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 209 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 195, 69 |
| Conread position: | 21-286 |
| Cow position: | chr1:43380387-43380120 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 90 |
| Conread position: | 24-283 |
| Cow position: | chr1:21508032-21508294 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 167, 8 |
| Conread position: | 30-281 |
| Cow position: | chr1:78689570-78689839 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 82, 20 |
| Conread position: | 36-266 |
| Cow position: | chr1:81913497-81913260 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 178, 11 |
| Conread position: | 37-280 |
| Cow position: | chr1:3137578-3137827 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 78, 153 |
| Conread position: | 53-283 |
| Cow position: | chr1:39418449-39418220 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 163, 5 |
| Conread position: | 56-262 |
| Cow position: | chr1:57901066-57900855 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 158, 69 |
| Conread position: | 64-283 |
| Cow position: | chr1:80988028-80988250 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 152, 53 |
| Conread position: | 72-274 |
| Cow position: | chr1:79663977-79663766 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 142, 61 |
| Conread position: | 79-283 |
| Cow position: | chr1:68845786-68845582 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 55, 39 |
| Conread position: | 84-283 |
| Cow position: | chr1:33811633-33811830 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 130, 186 |
| Conread position: | 89-270 |
| Cow position: | chr1:25383366-25383554 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 92-276 |
| Cow position: | chr1:3752236-3752044 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 93-243 |
| Cow position: | chr1:29901249-29901102 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 109-283 |
| Cow position: | chr1:84786495-84786677 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 55 |
| Conread position: | 110-283 |
| Cow position: | chr1:32631195-32631368 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 105, 36 |
| Conread position: | 124-283 |
| Cow position: | chr1:72141303-72141464 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 140 |
| Conread position: | 125-275 |
| Cow position: | chr1:52510503-52510346 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 126-283 |
| Cow position: | chr1:76470400-76470556 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 127-262 |
| Cow position: | chr1:19482332-19482191 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 133-266 |
| Cow position: | chr1:75744608-75744748 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 134-283 |
| Cow position: | chr1:75967185-75967332 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 80, 136 |
Show alignments to all cow chromosomes.